Teichlab / TissueTagLinks
Python package to interactively annotate histological images within a jupyter notebook
☆17Updated 11 months ago
Alternatives and similar repositories for TissueTag
Users that are interested in TissueTag are comparing it to the libraries listed below
Sorting:
- Spatial One☆29Updated 11 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 7 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆13Updated 11 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 4 months ago
- ☆41Updated last month
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- Interactive visualisation of CellphoneDB results☆10Updated 8 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated last week
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated this week
- R API and htmlwidget for Vitessce☆42Updated last month
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Updated 3 weeks ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- ☆20Updated last week
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 11 months ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated 10 months ago
- Landscape Single Cell Entropy☆20Updated 5 years ago
- Gene Expression Decomposition and Integration☆19Updated 7 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆12Updated 7 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated last month
- An R package for visualising cell-cell interactions☆43Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆22Updated last year
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆20Updated this week
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 11 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆11Updated last year
- ☆11Updated last year
- ☆14Updated this week