Python package to interactively annotate histological images within a jupyter notebook
☆19Oct 20, 2025Updated 10 months ago
Alternatives and similar repositories for TissueTag
Users that are interested in TissueTag are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- ☆40Jun 24, 2025Updated last year
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated last month
- ☆49Jan 28, 2026Updated 7 months ago
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Data-driven signal detection for unbiased scRNA-seq data analysis☆24Jan 22, 2026Updated 7 months ago
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- ☆14May 18, 2026Updated 3 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14May 13, 2026Updated 3 months ago
- Documentation☆20Updated this week
- ☆31Jul 27, 2026Updated last month
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- Single-cell copy number calling and event history reconstruction.☆28Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- Code used to process the data of the HBCA project☆34Feb 9, 2024Updated 2 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 4 months ago
- Identify cell types and pathways affected by genetic risk loci.☆37Feb 29, 2024Updated 2 years ago
- ☆26Jul 15, 2026Updated last month
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Updated this week
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- Developmental Spatiotemporal Optimal Transport☆14Mar 19, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated 2 years ago
- R package for normalisation of spatial transcriptomics data☆20Aug 12, 2026Updated 2 weeks ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 9 months ago
- ☆40Updated this week
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- This is a repository of IAMSAM, an image-based ST analysis tool☆22Jun 24, 2025Updated last year
- InstaPrism is an R package for fast implementation of BayesPrism☆59Jun 3, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Pairwise Hierarchical Model☆21Mar 11, 2022Updated 4 years ago
- ☆35Jul 20, 2026Updated last month
- Fast algorithms for GLM-PCA.☆17Mar 12, 2025Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated 11 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Aug 14, 2026Updated 2 weeks ago