Developmental Spatiotemporal Optimal Transport
☆13Mar 19, 2025Updated last year
Alternatives and similar repositories for DeST_OT
Users that are interested in DeST_OT are comparing it to the libraries listed below
Sorting:
- ☆14Jan 25, 2023Updated 3 years ago
- Data analysis for the moscot-framework project☆20Feb 27, 2026Updated 3 weeks ago
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated 2 months ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆26Feb 2, 2026Updated last month
- Simulating Sequence Evolution☆11Jul 9, 2024Updated last year
- Latent optimal transport (LOT) for low rank transport and clustering☆20Jul 22, 2021Updated 4 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆47Aug 18, 2025Updated 7 months ago
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 5 months ago
- Multi-omic single-cell optimal transport tools☆197Updated this week
- ☆12May 29, 2024Updated last year
- Toolbox for performing gene set enrichment analysis in Matlab (including ensemble enrichment)☆17Nov 5, 2023Updated 2 years ago
- R package for normalisation of spatial transcriptomics data☆17Jan 21, 2026Updated 2 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated 11 months ago
- IntegrateNet: A Deep learning Network for maize Stand Counting from UAV Imagery by Integrating Density and Local Count Maps.☆12Apr 15, 2022Updated 3 years ago
- A software package for analyzing snapshots of developmental processes☆158Sep 15, 2022Updated 3 years ago
- ☆26Aug 15, 2023Updated 2 years ago
- ☆10Dec 8, 2023Updated 2 years ago
- A toolkit for automated local phylogenomic analyses, or ALPHA☆12Oct 23, 2019Updated 6 years ago
- Code and example of the D-SPIN framework☆24Mar 12, 2026Updated last week
- This repository contains the scripts for reproducing the results presented in Costa AC, Ahamed T, Jordan D, Stephens GJ (2023) "A Markov…☆11Sep 25, 2025Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆42Mar 2, 2025Updated last year
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated last year
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Dec 1, 2025Updated 3 months ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Feb 6, 2026Updated last month
- ☆16Sep 8, 2024Updated last year
- ☆12Apr 13, 2020Updated 5 years ago
- Course Notes for PSYC 621 (Bayesian Data Analaysis, 2019 Fall)☆15Jun 5, 2020Updated 5 years ago
- Spatial-Linked Alignment Tool☆90Dec 20, 2024Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆101Feb 26, 2025Updated last year
- Bringing core concepts from anywidget to R☆20Aug 10, 2025Updated 7 months ago
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 9 months ago
- Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues☆12Nov 4, 2025Updated 4 months ago
- R package: Manifold learning in R☆13Apr 7, 2020Updated 5 years ago
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 6 years ago
- ☆39Feb 24, 2026Updated 3 weeks ago
- Koi Fish Pond☆14Mar 10, 2011Updated 15 years ago