theislab / interactive_plottingLinks
☆21Updated 4 years ago
Alternatives and similar repositories for interactive_plotting
Users that are interested in interactive_plotting are comparing it to the libraries listed below
Sorting:
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆57Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 9 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆28Updated 3 weeks ago
- ☆62Updated this week
- Identification of spatial homogeneous regions☆21Updated 5 months ago
- Test genes for Spatial Variation☆14Updated 6 months ago
- CAST package☆40Updated 7 months ago
- ☆19Updated 5 years ago
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 10 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated 6 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last year
- ☆22Updated 2 years ago
- ☆27Updated 8 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆30Updated last week
- ☆29Updated last year
- ☆42Updated 10 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Updated 9 months ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 11 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆23Updated 2 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 7 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆62Updated last month
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆23Updated last week
- Slides and Notebooks for scverse 2024☆17Updated 8 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago