theislab / interactive_plottingLinks
☆22Updated 5 years ago
Alternatives and similar repositories for interactive_plotting
Users that are interested in interactive_plotting are comparing it to the libraries listed below
Sorting:
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆62Updated 3 months ago
- CAST package☆41Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated 2 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆47Updated 3 weeks ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated last month
- Test genes for Spatial Variation☆15Updated 11 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 2 weeks ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 5 months ago
- ☆29Updated last year
- Identification of spatial homogeneous regions☆21Updated last month
- ☆22Updated 3 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆33Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 5 months ago
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- An R package for performing cell typing in SMI and other single cell data☆43Updated 6 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Nonnegative spatial factorization for multivariate count data☆61Updated 2 years ago
- ☆11Updated 6 years ago
- Python package to perform normalization and variance-stabilization of single-cell data☆25Updated 4 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated 11 months ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆84Updated last week
- ☆30Updated last year
- Tools to handle IMC data☆23Updated 3 years ago
- Spatial Single Cell transcriptomic library☆18Updated last month