theislab / interactive_plottingLinks
☆22Updated 3 weeks ago
Alternatives and similar repositories for interactive_plotting
Users that are interested in interactive_plotting are comparing it to the libraries listed below
Sorting:
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated last week
- CAST package☆42Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Updated 4 years ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆25Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 2 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- ☆22Updated 3 years ago
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- Test genes for Spatial Variation☆15Updated last year
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated 2 years ago
- ☆30Updated last year
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Updated last month
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Identification of spatial homogeneous regions☆21Updated 3 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated last year
- ☆24Updated last week
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 5 months ago
- ☆88Updated this week
- ☆19Updated 6 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Updated 3 years ago
- Python package to perform normalization and variance-stabilization of single-cell data☆25Updated 6 months ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Updated 5 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last month
- Slides and Notebooks for scverse 2024☆17Updated last year
- Spatial Single Cell transcriptomic library☆18Updated 2 weeks ago
- ☆62Updated 8 months ago