☆35Jun 11, 2026Updated last month
Alternatives and similar repositories for huCIRA
Users that are interested in huCIRA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Oct 31, 2025Updated 8 months ago
- ☆25Jul 15, 2026Updated last week
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- ☆19Jun 3, 2026Updated last month
- ☆19Jul 12, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for normalisation of spatial transcriptomics data☆18Jul 11, 2026Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆113May 27, 2025Updated last year
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆72Updated this week
- Scalable framework for integrating single-cell omics with genetic data using AnnData.☆20Jul 14, 2026Updated last week
- Code repository for TCAT analyses☆15Sep 26, 2025Updated 9 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated last month
- Pipeline for harmonising immunological receptor–epitope interactions☆15Jul 13, 2026Updated last week
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 3 weeks ago
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆67Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆16Updated this week
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 7 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆107Jul 13, 2026Updated last week
- Code and example of the D-SPIN framework☆39May 12, 2026Updated 2 months ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- ☆24Updated this week
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆46Jul 8, 2026Updated 2 weeks ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Sample representation benchmark for single-cell data☆13Jun 12, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14May 13, 2026Updated 2 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 8 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- Evaluation framework for computationally inferred gene networks from single-cell data.☆19Oct 23, 2025Updated 9 months ago
- ☆49Jan 28, 2026Updated 5 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 5 months ago
- AnnData interoperability in R☆192Updated this week
- ☆27Jan 29, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Differential spatial enrichment across conditions☆28Jul 14, 2026Updated last week
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 5 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆104Apr 16, 2026Updated 3 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34May 19, 2026Updated 2 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆136May 5, 2025Updated last year
- Toolbox for single-cell data analysis on sample level☆25Updated this week
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆64Jul 13, 2026Updated last week