theislab / huCIRALinks
☆30Updated last week
Alternatives and similar repositories for huCIRA
Users that are interested in huCIRA are comparing it to the libraries listed below
Sorting:
- Multi-resolution Variational Inference☆22Updated 3 weeks ago
- ☆36Updated 11 months ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆36Updated 8 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated 2 months ago
- ☆22Updated 3 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated last year
- ☆13Updated 5 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 4 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- Cell type pipes for R☆52Updated 2 years ago
- ☆45Updated 2 weeks ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆46Updated 3 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- R package for normalisation of spatial transcriptomics data☆17Updated 3 weeks ago
- ☆62Updated 5 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆24Updated 4 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- ☆29Updated 2 years ago
- ☆21Updated 7 months ago
- ☆27Updated 3 years ago
- Profile purification of single-cell spatial transcriptomics data☆28Updated 2 months ago
- Latent Embedding Multivariate Regression☆99Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago