dissatisfaction-ai / scHierarchyLinks
A toolking for cell type hierarchies: marker selection & consistent classification
☆22Updated 2 years ago
Alternatives and similar repositories for scHierarchy
Users that are interested in scHierarchy are comparing it to the libraries listed below
Sorting:
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated last month
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated 3 weeks ago
- ☆44Updated last month
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 2 months ago
- scover☆24Updated 2 years ago
- ☆37Updated 9 months ago
- A python package for chromVAR☆32Updated 2 years ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Pipeline for designing custom probes against human genes☆20Updated last year
- Information-based dimensionality reduction☆29Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Vaeda method for computational doublet annotation☆18Updated last year
- scVI extension for unspliced RNA☆16Updated 7 months ago
- ☆30Updated 3 years ago
- singleCellNet in Python☆15Updated 3 months ago
- Biology-centered data-driven quality control for scRNA-seq☆19Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated 11 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆35Updated 7 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated last year
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- ☆16Updated 2 years ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 7 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 7 months ago
- Interactive visualisation of CellphoneDB results☆11Updated 11 months ago