dissatisfaction-ai / scHierarchyView external linksLinks
A toolking for cell type hierarchies: marker selection & consistent classification
☆22Nov 26, 2023Updated 2 years ago
Alternatives and similar repositories for scHierarchy
Users that are interested in scHierarchy are comparing it to the libraries listed below
Sorting:
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated 11 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- Single-cell copy number calling and event history reconstruction.☆28Dec 21, 2024Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16May 16, 2023Updated 2 years ago
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated 3 weeks ago
- A set of files to do genomics analysis on python☆18Jun 5, 2025Updated 8 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- ☆45Jan 28, 2026Updated 2 weeks ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated this week
- ☆29Sep 4, 2023Updated 2 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 2 years ago
- ☆12Jun 6, 2024Updated last year
- Python bindings for SingleR☆14Jan 6, 2026Updated last month
- Interactive visualisation of CellphoneDB results☆11Jan 15, 2025Updated last year
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Apr 2, 2023Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Sep 23, 2025Updated 4 months ago
- Build contrasts for models defined with formulaic☆12Updated this week
- ☆13Oct 1, 2025Updated 4 months ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆19Updated this week
- Access public biological ontologies.☆15Aug 7, 2024Updated last year
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated this week
- Single Cell Analysis of Five'Ends☆50Mar 19, 2024Updated last year
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- singleCellNet in Python☆15Jan 29, 2026Updated 2 weeks ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 6 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 9 months ago
- Automatically annotate cell types, consistently across samples.☆18Updated this week
- factor models for omics data☆32Updated this week
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated 11 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Dec 11, 2025Updated 2 months ago
- The Monod package fits CME models to sequencing data.☆33Jan 28, 2026Updated 2 weeks ago
- R package for normalisation of spatial transcriptomics data☆17Jan 21, 2026Updated 3 weeks ago
- Code used for muti cellular factor analysis☆16Dec 13, 2023Updated 2 years ago
- ☆60Apr 5, 2024Updated last year