dissatisfaction-ai / scHierarchyLinks
A toolking for cell type hierarchies: marker selection & consistent classification
☆22Updated last year
Alternatives and similar repositories for scHierarchy
Users that are interested in scHierarchy are comparing it to the libraries listed below
Sorting:
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- ☆41Updated last month
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated this week
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆30Updated this week
- scover☆23Updated last year
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Interactive visualisation of CellphoneDB results☆10Updated 8 months ago
- Vaeda method for computational doublet annotation☆17Updated last year
- ☆12Updated 4 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 4 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Biology-centered data-driven quality control for scRNA-seq☆18Updated 2 years ago
- Python package to interactively annotate histological images within a jupyter notebook☆17Updated 11 months ago
- A python package for chromVAR☆30Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- ☆37Updated 7 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆37Updated last week
- ☆23Updated 8 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 9 months ago
- singleCellNet in Python☆15Updated 3 weeks ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 2 weeks ago
- .h5mu files interface for Seurat☆31Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- ☆16Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated last week
- ☆14Updated last month