Alternatives and similar repositories for scHierarchy:

Users that are interested in scHierarchy are comparing it to the libraries listed below

• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆47Updated 2 weeks ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆20Updated last week
• Teichlab / sctk
  ☆34Updated 4 months ago
• lcmmichielsen / scHPL
  ☆34Updated 9 months ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆24Updated 2 years ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆26Updated 4 months ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆25Updated 2 years ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 2 months ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 5 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆24Updated last month
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆32Updated this week
• PoolLab / generecovery
  ☆29Updated last year
• ventolab / cellphonedbviz
  Interactive visualisation of CellphoneDB results
  ☆9Updated last month
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆18Updated 4 years ago
• soedinglab / merlot
  Reconstruct the lineage topology of a scRNA-seq differentiation dataset.
  ☆18Updated 4 years ago
• cellatlas / cellatlas
  ☆16Updated 7 months ago
• jacobhepkema / scover
  scover
  ☆23Updated last year
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆28Updated 2 months ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆28Updated last year
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• ayshwaryas / ddqc
  Biology-centered data-driven quality control for scRNA-seq
  ☆15Updated last year
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated last month
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated this week
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated last year