dissatisfaction-ai / scHierarchyLinks
A toolking for cell type hierarchies: marker selection & consistent classification
☆22Updated last year
Alternatives and similar repositories for scHierarchy
Users that are interested in scHierarchy are comparing it to the libraries listed below
Sorting:
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated last year
- ☆41Updated last month
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated last week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- A python package for chromVAR☆30Updated 2 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 4 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆26Updated 2 years ago
- An R package for performing cell typing in SMI and other single cell data☆40Updated 4 months ago
- An interface for Nested Stochastic Block Model for single cell analysis☆37Updated 2 months ago
- ☆35Updated 6 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 8 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- .h5mu files interface for Seurat☆32Updated last year
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 5 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Vaeda method for computational doublet annotation☆17Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- ☆44Updated 10 months ago
- Interactive visualisation of CellphoneDB results☆10Updated 8 months ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆23Updated 2 months ago