Alternatives and similar repositories for DUBStepR

Users that are interested in DUBStepR are comparing it to the libraries listed below

• gxiaolab / scAllele
  ☆40Updated 5 months ago
• UPSUTER / GEMLI
  ☆33Updated last year
• wenweixiong / MARVEL
  ☆53Updated last year
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆36Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆32Updated 3 years ago
• McGranahanLab / TcellExTRECT
  ☆48Updated last year
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated last week
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• lkmklsmn / MitoTrace
  ☆18Updated last year
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆13Updated 3 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆22Updated last year
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆29Updated this week
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆53Updated 2 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 5 years ago
• nghiavtr / SCmut
  ☆34Updated 6 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆46Updated 2 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆40Updated 5 years ago
• immunogenomics / starCAT
  Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs
  ☆95Updated last week
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Updated 4 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 6 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 10 months ago
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆44Updated 6 years ago
• chensujun / scRNA
  ☆33Updated 4 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆39Updated 2 years ago
• cole-trapnell-lab / monocle2-rge-paper
  Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)
  ☆29Updated 5 years ago
• OscarGVelasco / ClusterFoldSimilarity
  Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
  ☆25Updated last week