R package for visualization of highly multiplexed imaging data
☆36Aug 25, 2026Updated last week
Alternatives and similar repositories for cytomapper
Users that are interested in cytomapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Updated this week
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- A toolkit for processing multiplexed tissue images☆68Updated this week
- A pixel classification based multiplexed image segmentation pipeline☆107Dec 5, 2023Updated 2 years ago
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆29Jan 31, 2026Updated 7 months ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated last year
- Imaging Mass Cytometry (IMC) file type support for napari☆13Jul 8, 2026Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Jun 23, 2026Updated 2 months ago
- CODEX data processing code☆13Jul 1, 2025Updated last year
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated last month
- Helper functions for working with inForm data.☆25May 3, 2022Updated 4 years ago
- R package for normalisation of spatial transcriptomics data☆20Aug 12, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆14Mar 3, 2023Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Sep 23, 2025Updated 11 months ago
- ☆11Aug 21, 2024Updated 2 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆70Sep 19, 2025Updated 11 months ago
- ☆27Updated this week
- ☆19Apr 5, 2024Updated 2 years ago
- Cytometry dATa anALYsis Tools☆75Apr 28, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆24Mar 22, 2023Updated 3 years ago
- Multiview Intercellular SpaTial modeling framework☆74Jan 15, 2026Updated 7 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 3 years ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆22May 19, 2025Updated last year
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆28Dec 5, 2022Updated 3 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- A tiny Python library for writing multi-channel TIFF stacks.☆31Updated this week
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell differential expression☆19Apr 23, 2026Updated 4 months ago
- Python API and Jupyter widget for Vitessce☆67Aug 10, 2026Updated 3 weeks ago
- The Single-Cell Pathology Landscape of Breast Cancer☆28Jan 14, 2020Updated 6 years ago
- Differential spatial enrichment across conditions☆28Jul 14, 2026Updated last month
- data frames that print as ggplots☆14Oct 13, 2020Updated 5 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆24Jan 9, 2026Updated 7 months ago
- An R package for handling and analysing imaging mass cytometry data☆32May 19, 2026Updated 3 months ago