BodenmillerGroup / cytomapperLinks
R package for visualization of highly multiplexed imaging data
☆34Updated 8 months ago
Alternatives and similar repositories for cytomapper
Users that are interested in cytomapper are comparing it to the libraries listed below
Sorting:
- R based workflow for multiplexed imaging data☆36Updated 6 months ago
- List of Spatial Transcriptomics related Tools organized per category☆102Updated last week
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆84Updated 3 years ago
- An R package for handling and analysing imaging mass cytometry data☆30Updated 3 weeks ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52Updated 3 years ago
- ☆24Updated last week
- ☆30Updated last year
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆69Updated 4 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Updated 4 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Updated last month
- ☆19Updated 6 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆39Updated 2 months ago
- Multiview Intercellular SpaTial modeling framework☆71Updated 2 weeks ago
- Profile purification of single-cell spatial transcriptomics data☆27Updated 2 months ago
- ☆33Updated 8 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- ☆27Updated last year
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆17Updated 4 months ago
- ☆66Updated 2 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Updated last year
- Spatial Single-Cell Analysis Toolkit☆108Updated 3 weeks ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆33Updated 2 weeks ago
- Python package for reading imaging mass cytometry (IMC) files☆18Updated last week
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Updated 2 years ago
- A pixel classification based multiplexed image segmentation pipeline☆105Updated 2 years ago
- From geospatial to spatial -omics☆100Updated 2 months ago