Alternatives and similar repositories for novae

Users that are interested in novae are comparing it to the libraries listed below

• dpeerlab / ENVI
  ☆48Updated last week
• prabhakarlab / Banksy_py
  ☆49Updated 5 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated 2 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆34Updated last month
• scverse / spatialdata-notebooks
  ☆53Updated last week
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆66Updated last year
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated 2 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆73Updated 2 months ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆80Updated last year
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆28Updated last week
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated last month
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆23Updated 9 months ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆58Updated 11 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆79Updated last month
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆59Updated this week
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆42Updated 3 years ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆23Updated last year
• rendeirolab / LazySlide
  Accessible and interoperable whole slide image analysis
  ☆47Updated this week
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆65Updated last year
• wanglab-broad / CAST
  CAST package
  ☆38Updated 7 months ago
• spacetx-spacejam / data
  data for spacejam2
  ☆17Updated 2 years ago
• theislab / scTab
  ☆58Updated 8 months ago
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆65Updated last year
• AI4SCR / ATHENA
  ☆33Updated 4 months ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆51Updated 3 months ago
• shuxiaoc / maxfuse
  ☆52Updated last year
• LiHongCSBLab / SOAPy
  ☆29Updated 3 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆28Updated 3 weeks ago
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆18Updated 3 years ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆27Updated 8 months ago