MICS-Lab / novaeLinks
Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.
☆88Updated 2 weeks ago
Alternatives and similar repositories for novae
Users that are interested in novae are comparing it to the libraries listed below
Sorting:
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆52Updated 2 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 5 months ago
- ☆40Updated last year
- Spatial Single-Cell Analysis Toolkit☆105Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated last month
- End-to-end analysis of spatial multi-omics data☆101Updated last month
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆33Updated 5 months ago
- ☆35Updated this week
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 9 months ago
- ☆62Updated last week
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆71Updated last month
- ☆85Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆48Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆69Updated 2 years ago
- data for spacejam2☆18Updated 3 years ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 6 months ago
- comseg☆24Updated 10 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 9 months ago
- Code used to benchmark Xenium☆72Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆47Updated last month
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆81Updated 2 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆98Updated 9 months ago
- A toolkit for processing multiplexed tissue images☆67Updated last week
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Updated 8 months ago