Alternatives and similar repositories for novae:

Users that are interested in novae are comparing it to the libraries listed below

• dpeerlab / ENVI
  ☆46Updated last week
• prabhakarlab / Banksy_py
  ☆45Updated 4 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated 2 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated last month
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆56Updated 9 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆35Updated 2 months ago
• wanglab-broad / CAST
  CAST package
  ☆33Updated 5 months ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆25Updated this week
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆35Updated 4 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆77Updated last week
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆65Updated 3 weeks ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆21Updated 8 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆23Updated last year
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆18Updated 3 years ago
• theislab / scTab
  ☆57Updated 7 months ago
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆56Updated this week
• nolanlab / NeighborhoodCoordination
  Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…
  ☆57Updated 5 months ago
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated last month
• AI4SCR / ATHENA
  ☆31Updated 3 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆34Updated last month
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆40Updated 3 years ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆48Updated 2 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆34Updated 9 months ago
• ElementoLab / utag
  ☆34Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆36Updated last year
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆77Updated last year
• spacetx-spacejam / data
  data for spacejam2
  ☆17Updated 2 years ago
• jian-shu-lab / Bering
  ☆16Updated this week
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆57Updated 3 weeks ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆26Updated 6 months ago