Alternatives and similar repositories for sagenet

Users that are interested in sagenet are comparing it to the libraries listed below

• theislab / scTab
  ☆59Updated 10 months ago
• YosefLab / velovi
  ☆40Updated this week
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆48Updated 5 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• PeterZZQ / CellPath
  ☆21Updated 3 years ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 8 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆31Updated 3 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated this week
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 2 months ago
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆30Updated last month
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 9 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• yutongo / TIGON
  ☆46Updated 3 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated this week
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆28Updated 2 years ago
• SchubertLab / mvTCR
  ☆53Updated 8 months ago
• AllonKleinLab / paper-data
  ☆20Updated 3 weeks ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆72Updated last month
• dpeerlab / ENVI
  ☆48Updated last month
• KANG-BIOINFO / CellDrift
  CellDrift: temporal perturbation effects for single cell data
  ☆13Updated 2 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆35Updated 2 years ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆44Updated this week
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆61Updated last year
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆57Updated last month
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 8 months ago
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆33Updated 3 years ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆24Updated 3 months ago