Spatial reconstruction of dissociated single-cell data
☆20Jan 12, 2024Updated 2 years ago
Alternatives and similar repositories for sagenet
Users that are interested in sagenet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Sep 27, 2022Updated 3 years ago
- ☆14Feb 24, 2020Updated 6 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆25Feb 24, 2025Updated last year
- ☆27Dec 25, 2023Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 6 years ago
- Reproducible analyses for the NicheCompass manuscript☆14Jul 3, 2025Updated last year
- Learning cell communication from spatial graphs of cells☆119Jan 15, 2024Updated 2 years ago
- ☆12Aug 29, 2024Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆181Jun 10, 2024Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆136Jun 26, 2026Updated last week
- ☆15Jun 27, 2025Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆70Apr 24, 2026Updated 2 months ago
- ☆13Jul 1, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A σ-VAE implementation in TensorFLow☆16Mar 24, 2023Updated 3 years ago
- ☆15Jul 8, 2022Updated 3 years ago
- R package for normalisation of spatial transcriptomics data☆18Jan 21, 2026Updated 5 months ago
- Quantifying experimental perturbations at single cell resolution☆115Sep 27, 2024Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆83Jul 25, 2025Updated 11 months ago
- Drug-Target Interaction Prediction Using Convolutional Neural Networks By Images of Compounds☆10Jun 16, 2020Updated 6 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated 11 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated 3 months ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆27Sep 23, 2025Updated 9 months ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆48Mar 1, 2024Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 4 months ago
- CellRank's reproducibility repository.☆17Jan 13, 2022Updated 4 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"☆25Jun 30, 2020Updated 6 years ago
- Legacy repository for asc_seurat up to v2. For v3+ use github.com/Pereira-Lab-UF/asc_seurat☆24May 18, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Official Implementation of Multi-Masked Aggregators for Graph Neural Networks in Pytorch and PyTorch Geometric☆11Mar 24, 2023Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆33Jul 16, 2025Updated 11 months ago
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated last week
- c-lasso: a Python package for constrained sparse regression and classification☆31May 5, 2021Updated 5 years ago
- Conditional out-of-distribution prediction☆64Aug 2, 2024Updated last year
- ☆29Apr 1, 2025Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆41Nov 14, 2022Updated 3 years ago