MarioniLab / sagenetLinks
Spatial reconstruction of dissociated single-cell data
☆17Updated last year
Alternatives and similar repositories for sagenet
Users that are interested in sagenet are comparing it to the libraries listed below
Sorting:
- A python package for chromVAR☆28Updated 2 years ago
- A set of files to do genomics analysis on python☆18Updated 5 months ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- ☆13Updated 5 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆26Updated last year
- ☆21Updated 3 years ago
- CAST package☆38Updated 7 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- ☆45Updated 2 years ago
- ☆58Updated 8 months ago
- single cell foundation model for Gene network inference and more☆16Updated 8 months ago
- ☆20Updated 2 months ago
- ☆20Updated last week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆47Updated 4 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 4 months ago
- ☆25Updated last week
- Parse ArchR arrow files to anndata h5ad☆12Updated last year
- Spatial direct messaging detected by bivariate Moran☆26Updated last month
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 9 months ago
- ☆13Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated this week
- ☆26Updated 5 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆29Updated last month
- Benchmark of GRNs using the GRETA pipeline☆24Updated 2 months ago
- Molecular interactions inference from single-cell multi-omics data☆24Updated 2 weeks ago
- ☆39Updated this week