quentinblampey / spatialdata_xenium_explorer
Interoperability between SpatialData and the Xenium Explorer
☆17Updated 6 months ago
Alternatives and similar repositories for spatialdata_xenium_explorer:
Users that are interested in spatialdata_xenium_explorer are comparing it to the libraries listed below
- ☆25Updated 4 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆31Updated 9 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆25Updated 4 months ago
- ☆48Updated this week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆14Updated last week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- ☆33Updated 10 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆33Updated 2 months ago
- ☆13Updated 6 years ago
- Spatial Single-Cell Analysis Toolkit☆85Updated 2 weeks ago
- Segmentation error aware clustering for multiplexed imaging☆15Updated last month
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆30Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 8 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last year
- Probabilistic cell segmentation for in situ spatial transcriptomics☆62Updated last week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆24Updated 3 weeks ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆16Updated last week
- ☆27Updated 4 months ago
- ☆41Updated this week
- ☆37Updated 2 months ago
- Interactive visualization of spatial omics data☆48Updated this week
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆17Updated last year
- CAST package☆29Updated 3 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆74Updated last month
- ☆32Updated last week
- Code used to benchmark Xenium☆44Updated 7 months ago
- Minimum Information about Tissue Imaging☆20Updated last year
- Python package for reading imaging mass cytometry (IMC) files☆13Updated this week
- Bayesian Analytics for Spatial Segmentation☆23Updated 4 months ago