quentinblampey / spatialdata_xenium_explorerLinks
Interoperability between SpatialData and the Xenium Explorer
☆24Updated last year
Alternatives and similar repositories for spatialdata_xenium_explorer
Users that are interested in spatialdata_xenium_explorer are comparing it to the libraries listed below
Sorting:
- https://sparrow-pipeline.readthedocs.io/en/latest/☆29Updated this week
- CAST package☆40Updated 9 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆39Updated 3 weeks ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆26Updated last week
- Spatial direct messaging detected by bivariate Moran☆27Updated 2 weeks ago
- ☆36Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆37Updated 5 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 10 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆34Updated this week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆20Updated 3 months ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆24Updated last year
- ☆49Updated 2 months ago
- Test genes for Spatial Variation☆14Updated 7 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆15Updated 3 months ago
- ☆38Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated last week
- ☆27Updated 10 months ago
- ☆65Updated this week
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆82Updated last year
- Spatial One☆28Updated 9 months ago
- Spatial analysis of FISH data☆31Updated 2 months ago
- Segmentation error aware clustering for multiplexed imaging☆18Updated 6 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated 2 weeks ago
- Identification of spatial homogeneous regions☆21Updated 6 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated last month
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆36Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆24Updated last month