Interoperability between SpatialData and the Xenium Explorer
☆26Jul 31, 2024Updated last year
Alternatives and similar repositories for spatialdata_xenium_explorer
Users that are interested in spatialdata_xenium_explorer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 10 months ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Updated this week
- Spatial One☆30Oct 31, 2024Updated last year
- R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients☆36Apr 9, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆288Updated this week
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆82Feb 10, 2026Updated 5 months ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆98Apr 30, 2026Updated 2 months ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- CAST package☆44Oct 26, 2024Updated last year
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated last month
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- An open and interoperable data framework for spatial omics data☆382Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated last year
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆38Jul 7, 2026Updated last week
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 3 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆180Updated this week
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆100Dec 8, 2022Updated 3 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆45Jun 11, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆26Aug 1, 2022Updated 3 years ago
- Fast array utilities☆15Updated this week
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25May 3, 2023Updated 3 years ago
- ☆74May 28, 2025Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated last year
- ☆37Oct 22, 2025Updated 8 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 4 months ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆208Jun 26, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- ☆37Updated this week
- Code for the spatial transcriptomic paper on IPF lungs☆23Jul 18, 2024Updated 2 years ago
- ☆29Nov 21, 2019Updated 6 years ago
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 2 months ago
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated last year
- ☆23Mar 29, 2023Updated 3 years ago