Alternatives and similar repositories for epytope

Users that are interested in epytope are comparing it to the libraries listed below

• statbiophys / HLAGuessr
  ☆18Updated 5 months ago
• hart-lab / drugz
  DRUGZ software
  ☆23Updated 4 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 8 months ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆24Updated last year
• GreiffLab / immuneSIM
  ☆38Updated last year
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 2 years ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆36Updated 5 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• TRON-Bioinformatics / neofox
  Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
  ☆33Updated 6 months ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• theislab / tcellmatch
  ☆40Updated 5 years ago
• DanHanh / scLinear
  ☆19Updated last year
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆27Updated 3 weeks ago
• bassanilab / NeoDisc
  NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…
  ☆12Updated 11 months ago
• IEDB / TCRMatch
  ☆29Updated 3 months ago
• LukszaLab / NeoantigenEditing
  ☆20Updated 3 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆52Updated 4 months ago
• seshadrilab / tcrconvert
  Convert TCR gene names
  ☆14Updated 5 months ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆32Updated 2 months ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆67Updated last year
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated 2 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆26Updated last year
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆49Updated 7 months ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated last year
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆26Updated last year
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 4 years ago