Alternatives and similar repositories for epytope

Users that are interested in epytope are comparing it to the libraries listed below

• GreiffLab / immuneSIM
  ☆38Updated last year
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆25Updated last year
• statbiophys / HLAGuessr
  ☆18Updated 2 months ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• DanHanh / scLinear
  ☆19Updated 11 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 4 months ago
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆30Updated 4 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆36Updated last week
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆34Updated 4 years ago
• IEDB / TCRMatch
  ☆29Updated this week
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 5 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆48Updated last month
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 2 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• seshadrilab / tcrconvert
  Convert TCR gene names
  ☆13Updated last month
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆49Updated 3 months ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆35Updated last month
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• hart-lab / drugz
  DRUGZ software
  ☆23Updated 3 years ago
• theislab / tcellmatch
  ☆40Updated 4 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆68Updated last week
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• cellatlas / human
  ☆43Updated 7 months ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆20Updated 2 years ago
• andrewrech / antigen.garnish
  ☆48Updated 2 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 4 years ago