Alternatives and similar repositories for CAST:

Users that are interested in CAST are comparing it to the libraries listed below

• wanglab-broad / spin
  SPatial INtegration of spatially resolved transcriptomics datasets
  ☆13Updated 5 months ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆18Updated 2 weeks ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆23Updated 6 months ago
• dyxmvp / Spatial_ATAC-seq
  ☆20Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆25Updated last month
• Teichlab / sctk
  ☆34Updated 4 months ago
• theislab / ncem_tutorials
  ☆12Updated 2 years ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆36Updated 5 months ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆22Updated 3 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆50Updated last month
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆47Updated last week
• jbergenstrahle / STUtility
  ☆46Updated last year
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆26Updated 2 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated this week
• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆14Updated last year
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated 2 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆36Updated 2 years ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆28Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 2 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆19Updated this week
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆23Updated last year
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated last month
• almaan / eggplant
  ☆20Updated 2 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆30Updated 3 weeks ago
• liuqivandy / SpaGene
  ☆18Updated last year
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆17Updated last month
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆30Updated 2 weeks ago