CAST package
☆44Oct 26, 2024Updated last year
Alternatives and similar repositories for CAST
Users that are interested in CAST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for normalisation of spatial transcriptomics data☆20Aug 12, 2026Updated 2 weeks ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆39Jul 7, 2026Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 9 months ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated 2 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26Jun 24, 2026Updated 2 months ago
- ☆12May 24, 2024Updated 2 years ago
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆18May 26, 2026Updated 3 months ago
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆25Jan 20, 2026Updated 7 months ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated last year
- ☆69Apr 22, 2026Updated 4 months ago
- cell type specific, trait-associated gene regulation☆30Aug 5, 2026Updated 3 weeks ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆38Aug 15, 2026Updated 2 weeks ago
- ☆48Jun 1, 2026Updated 2 months ago
- scTM: A package for topic modelling in transcriptomics data☆27May 1, 2024Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆155Aug 21, 2026Updated last week
- ☆43Jan 12, 2026Updated 7 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆17Aug 1, 2025Updated last year
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 6 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 11 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Oct 13, 2019Updated 6 years ago
- Python API and Jupyter widget for Vitessce☆67Aug 10, 2026Updated 2 weeks ago
- ☆28Feb 25, 2025Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆80Aug 22, 2026Updated last week
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- ☆14Mar 17, 2022Updated 4 years ago
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 8 months ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 9 months ago
- ☆160Mar 20, 2026Updated 5 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART☆24Nov 11, 2021Updated 4 years ago
- Phenotype Associated Spatial Signature Analysis with Graph-based Embedding☆26Mar 5, 2025Updated last year
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆27Mar 13, 2024Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆30Sep 6, 2024Updated last year