Selecting the optimal trajectory inference based on a given dataset and user input 🔮
☆19Jun 29, 2020Updated 6 years ago
Alternatives and similar repositories for dynguidelines
Users that are interested in dynguidelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comparison of methods for trajectory inference on single-cell data 🥇☆223Aug 30, 2023Updated 3 years ago
- ☆19Oct 27, 2021Updated 5 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- ☆12Aug 24, 2019Updated 7 years ago
- TFFM framework☆13Sep 22, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Aug 26, 2026Updated 2 months ago
- Lightweight GPU-accelerated spatial operations for spatial omics, with CUDA kernels and Python APIs for point-in-polygon queries, overlap…☆14Updated this week
- CellNet, for cancer☆11Jul 14, 2022Updated 4 years ago
- ☆12Sep 27, 2026Updated last month
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆187Jun 24, 2021Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 7 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Mar 24, 2021Updated 5 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 8 years ago
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Stitch multiple Visium slides together☆16Oct 16, 2025Updated last year
- A Toolkit for Sequence Motif Analysis☆33Oct 26, 2026Updated last week
- public production version of sequin to share with the public☆11Jun 12, 2026Updated 4 months ago
- Mouse cell atlas☆63Apr 18, 2020Updated 6 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- ☆12Sep 20, 2019Updated 7 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆42Aug 23, 2023Updated 3 years ago
- scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing. BMC Genomics 24, 228 (2023).☆28Feb 4, 2026Updated 8 months ago
- ☆14Jun 11, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Creating composite plot using 'aplot'☆10Aug 4, 2026Updated 2 months ago
- R package for metabolic enzyme enrichment anaylsis☆14Oct 24, 2025Updated last year
- An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts☆19Aug 14, 2025Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆92Dec 4, 2025Updated 10 months ago
- Single-cell differential expression☆22Oct 18, 2026Updated 2 weeks ago
- ☆28May 16, 2025Updated last year
- Spatially Variable Profiler☆12Aug 18, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Mosaic single cell data integration using non-overlapping features☆40Sep 20, 2022Updated 4 years ago
- Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication…☆21Sep 9, 2020Updated 6 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Aug 17, 2016Updated 10 years ago
- Multi-view Factorization AutoEncoder with Network Constraints for Multi-omic Integrative Analysis☆12Sep 27, 2018Updated 8 years ago
- R package for normalisation of spatial transcriptomics data☆21Oct 26, 2026Updated last week