JinmiaoChenLab / scTMLinks
scTM: A package for topic modelling in transcriptomics data
☆24Updated last year
Alternatives and similar repositories for scTM
Users that are interested in scTM are comparing it to the libraries listed below
Sorting:
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆40Updated 9 months ago
- ☆31Updated 3 weeks ago
- ☆31Updated 8 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 2 weeks ago
- ☆30Updated 6 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- CAST package☆40Updated last year
- Spatial direct messaging detected by bivariate Moran☆31Updated 3 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆52Updated 10 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 9 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- Multi-resolution Variational Inference☆22Updated this week
- Spatial Cellular Estimator for Tumors☆58Updated last month
- ☆28Updated 2 weeks ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 8 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆29Updated last year
- Single-Cell Inference of Class Switch Recombination☆19Updated 2 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- ☆19Updated 4 months ago
- ☆16Updated 11 months ago
- ☆40Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Publically accessible code for DIISCO method☆12Updated last month
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Updated last year
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- ☆60Updated 2 months ago