JinmiaoChenLab / scTMLinks
scTM: A package for topic modelling in transcriptomics data
☆21Updated last year
Alternatives and similar repositories for scTM
Users that are interested in scTM are comparing it to the libraries listed below
Sorting:
- ☆31Updated 6 months ago
- ☆31Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 7 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- Spatial Cellular Estimator for Tumors☆57Updated 3 weeks ago
- CAST package☆40Updated 10 months ago
- ☆30Updated 4 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆52Updated 8 months ago
- Multi-resolution Variational Inference☆22Updated 2 months ago
- ☆18Updated 2 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆78Updated 2 years ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆25Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆12Updated 11 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆62Updated 3 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- ☆58Updated 2 months ago
- Single-Cell Inference of Class Switch Recombination☆19Updated last week
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- Construct Tumor Transition Zone Microenvironment☆48Updated 2 months ago
- Spatial One☆28Updated 10 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆28Updated last year
- ☆27Updated last week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 3 weeks ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 3 months ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆43Updated 7 months ago