☆24Apr 29, 2026Updated this week
Alternatives and similar repositories for SpatialData
Users that are interested in SpatialData are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆41Apr 12, 2026Updated 2 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 5 months ago
- Automatically annotate cell types, consistently across samples.☆20Updated this week
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated last month
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Genomic Features in Python from BioConductor's AnnotationHub☆23Apr 20, 2026Updated last week
- ☆22Aug 17, 2023Updated 2 years ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆15Feb 27, 2026Updated 2 months ago
- A simple native R reader for Zarr Arrays☆49Updated this week
- Interactive visualization of spatial omics data☆85Updated this week
- Spatial omics analysis and visualization library☆25Updated this week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆18Sep 19, 2025Updated 7 months ago
- ☆72May 28, 2025Updated 11 months ago
- CAST package☆44Oct 26, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Streaming directly to Zarr on the file system or S3☆29Apr 21, 2026Updated last week
- ☆65Updated this week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆17Apr 20, 2026Updated last week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆43Mar 2, 2025Updated last year
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 3 years ago
- Slides and Notebooks for scverse 2024☆17Sep 24, 2024Updated last year
- ☆30Oct 4, 2024Updated last year
- Python API and Jupyter widget for Vitessce☆65Apr 17, 2026Updated last week
- An introduction to OME-Zarr for big bioimaging data☆26Apr 15, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 5 months ago
- Structure learning based for zero-inflated negative binomial data☆10Jul 11, 2024Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- A multi-dimensional spatial image data structure for scientific Python.