Converts 'MultiQC' Reports into Tidy Data Frames
☆19Apr 1, 2024Updated 2 years ago
Alternatives and similar repositories for TidyMultiqc
Users that are interested in TidyMultiqc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 4 months ago
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 5 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆15May 18, 2026Updated 3 weeks ago
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 3 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- deploy a snakemake pipeline directly from version control (under development)☆25Jun 1, 2026Updated last week
- R package for normalisation of spatial transcriptomics data☆18Jan 21, 2026Updated 4 months ago
- Write CWL in R☆15May 9, 2024Updated 2 years ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- notes on the farm cluster☆16Feb 26, 2025Updated last year
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Jul 13, 2023Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Jul 8, 2024Updated last year
- tidy processing of biological sequences in R☆44Jan 8, 2025Updated last year
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- Provides classes for working with sets☆11Dec 19, 2025Updated 5 months ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 9 months ago
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆33Apr 16, 2026Updated last month
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆21Apr 27, 2025Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- The command-line interface to GGD☆42Oct 16, 2022Updated 3 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 4 years ago
- ORF prediction using python☆10Aug 24, 2021Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 4 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated 2 months ago
- ☆13Dec 20, 2025Updated 5 months ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- nf-test utility functions☆12May 22, 2026Updated 2 weeks ago
- ☆13Jan 23, 2020Updated 6 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 2 weeks ago
- A record-replay framework for the R programming language☆16Aug 13, 2021Updated 4 years ago
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated 2 months ago
- (current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing …☆22Updated this week
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 7 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- Documentation of the Snakemake-Profiles project.☆55Mar 15, 2022Updated 4 years ago