Alternatives and similar repositories for TidyMultiqc

Users that are interested in TidyMultiqc are comparing it to the libraries listed below

• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated 3 weeks ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated 3 weeks ago
• gosling-lang / grosling
  R interface to 'Gos'
  ☆39Updated 2 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last year
• BIMSBbioinfo / pigx_rnaseq
  Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
  ☆21Updated 6 months ago
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆15Updated last month
• JD2112 / methylr
  methylR: a single shiny solution from sequencer data to pathway analysis
  ☆12Updated 8 months ago
• qbic-pipelines / rnadeseq
  Differential gene expression analysis and pathway analysis of RNAseq data
  ☆32Updated last week
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 7 months ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆40Updated last year
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆29Updated 6 months ago
• abbvie-external / OmicNavigator
  Open-Source Software for Omic Data Analysis and Visualization
  ☆35Updated last month
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆16Updated 8 months ago
• dcjones / isolator
  Rapid and robust analysis of RNA-Seq experiments.
  ☆32Updated 9 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 3 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• UMCUGenetics / NextflowModules
  UMCU Genetics Nextflow modules
  ☆28Updated 8 months ago
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• Bioconductor / Rsamtools
  Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
  ☆28Updated 3 weeks ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆68Updated 3 weeks ago
• shchurch / countland
  tools in python and R for analyzing biological count data, especially from single cell RNAseq
  ☆22Updated last year
• sigven / pharmOncoX
  Targeted and non-targeted anticancer drugs and drug regimens
  ☆28Updated last week
• mskcc / facets2n
  Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…
  ☆12Updated last year
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆22Updated last year
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆35Updated 10 months ago