DavisLaboratory / vissELinks
An R/Bioconductor package to identify higher-order molecular phenotypes
☆19Updated last year
Alternatives and similar repositories for vissE
Users that are interested in vissE are comparing it to the libraries listed below
Sorting:
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated last week
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- scWGCNA☆61Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆78Updated last week
- ☆57Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆37Updated 6 months ago
- Pan-Cancer Single Cell Classifier☆80Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 10 months ago
- ☆47Updated 9 months ago
- ☆39Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- ☆19Updated 3 years ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆19Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- ☆32Updated 8 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆20Updated last week
- ☆48Updated last year
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Updated 3 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆31Updated 5 months ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Using TCR and expression for sequence embedding☆59Updated 2 months ago
- Easy and comprehensive biological network reconstruction and analysis☆32Updated last month
- ☆55Updated 4 years ago
- ☆47Updated 5 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 4 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year