DavisLaboratory / vissELinks
An R/Bioconductor package to identify higher-order molecular phenotypes
☆19Updated 2 years ago
Alternatives and similar repositories for vissE
Users that are interested in vissE are comparing it to the libraries listed below
Sorting:
- ☆48Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last week
- scWGCNA☆61Updated 3 years ago
- Easy and comprehensive biological network reconstruction and analysis☆34Updated 4 months ago
- ☆57Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated this week
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆43Updated 11 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Updated 5 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆96Updated 8 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 4 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆39Updated 4 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆18Updated 11 months ago
- ☆30Updated 7 years ago
- ☆38Updated 3 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Updated 2 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆21Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆44Updated this week
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago