DavisLaboratory / vissELinks
An R/Bioconductor package to identify higher-order molecular phenotypes
☆18Updated last year
Alternatives and similar repositories for vissE
Users that are interested in vissE are comparing it to the libraries listed below
Sorting:
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated last week
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Inference of TCR motifs☆32Updated 3 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Using TCR and expression for sequence embedding☆59Updated last month
- ☆39Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆78Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆76Updated 3 weeks ago
- scWGCNA☆61Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- ☆57Updated last year
- CDSeq R Package☆21Updated 2 months ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆47Updated 8 months ago
- ☆32Updated 7 months ago
- Normalize CITEseq Data☆66Updated 5 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 9 months ago
- R package for the analysis of single-cell immune repertoires☆43Updated 7 months ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆43Updated 4 months ago
- ☆29Updated 2 years ago
- ☆44Updated 10 months ago
- ☆20Updated 3 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆56Updated this week