bcgsc / ntJoinLinks
🔗Genome assembly scaffolder using minimizer graphs
☆85Updated last year
Alternatives and similar repositories for ntJoin
Users that are interested in ntJoin are comparing it to the libraries listed below
Sorting:
- ✏️ Genome assembly polishing & SNV detection☆71Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 2 months ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 2 months ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Synteny Imager☆65Updated 3 weeks ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆75Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- k-mer learning materials☆80Updated 9 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- ☆67Updated 2 weeks ago
- Visualize whole genome alignments as linear maps☆73Updated 3 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated 11 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 7 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- ☆84Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆85Updated 3 weeks ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- 🪡Correct and scaffold assemblies using long reads☆56Updated 2 months ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated this week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A program for assessing the T2T genome continuity☆89Updated last month
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago