bcgsc / ntJoinLinks
πGenome assembly scaffolder using minimizer graphs
β85Updated last year
Alternatives and similar repositories for ntJoin
Users that are interested in ntJoin are comparing it to the libraries listed below
Sorting:
- βοΈ Genome assembly polishing & SNV detectionβ72Updated 4 months ago
- Hybrid error correction of long reads using colored de Bruijn graphsβ107Updated 3 weeks ago
- PacBio hybrid error correction through iterative short read consensusβ60Updated 6 years ago
- Evaluate variant calls and its combination with k-mer multiplicityβ67Updated 3 years ago
- A tool for Racon polishing of miniasm assembliesβ78Updated 5 months ago
- A fast tool for hybrid genome assembly of long and short readsβ78Updated 5 years ago
- Synteny Imagerβ65Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignmentβ87Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKERβ49Updated 2 months ago
- β68Updated this week
- Read, manipulate and visualize 'Pairwise mApping Format' data in Rβ77Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfishβ57Updated 3 years ago
- β Long Interval Nucleotide K-mer Scaffolderβ73Updated 10 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2β77Updated 9 years ago
- Improve the quality of a denovo assembly by scaffolding and gap fillingβ57Updated 5 years ago
- Remove lambda phage reads from a fastq fileβ29Updated 3 years ago
- k-mer learning materialsβ83Updated 11 months ago
- tools for assessing the accuracy of genome assembliesβ35Updated last year
- Splitting of sequence reads by internal adapter sequence searchβ51Updated 2 years ago
- β32Updated 2 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.β90Updated last year
- Visualize whole genome alignments as linear mapsβ74Updated 2 weeks ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore readsβ67Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignmentβ53Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)β45Updated 5 years ago
- β45Updated 9 years ago
- Simple pileup-based variant callerβ95Updated 9 months ago
- Generates an NCBI .tbl file of annotations on a genome.β68Updated 7 years ago
- Detecting multi-genome synteny using minimizer graph mappingβ99Updated this week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Tβ¦β59Updated 2 years ago