HMPNK / CSA2.6
Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes
☆10Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for CSA2.6
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 2 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- The MafFilter genome alignment processor☆17Updated last month
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆14Updated 10 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆12Updated 7 years ago
- ☆12Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated last month
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- ☆15Updated 3 years ago
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Set of script for the paper on the cattle graph genome☆13Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆15Updated last month
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆10Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- plot genome alignment synteny☆19Updated 4 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Mitochondrial Genome Assembly☆13Updated 8 months ago
- Genome alignment and synteny plots☆27Updated last year
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago