The shiny app that accompanies the ngsReports R package
☆13Jun 10, 2021Updated 4 years ago
Alternatives and similar repositories for shinyNgsreports
Users that are interested in shinyNgsreports are comparing it to the libraries listed below
Sorting:
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- interactive Multi Objective K-mer Analysis☆23Mar 5, 2023Updated 3 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 3 months ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 3 months ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- ☆16Apr 9, 2021Updated 4 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 5 years ago
- ☆23Nov 9, 2025Updated 4 months ago
- ☆10Jun 13, 2020Updated 5 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 14 years ago
- ☆22Sep 17, 2025Updated 5 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Alignment-Free methods Adjusted by Neural Network☆13Feb 20, 2020Updated 6 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 7 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆15Feb 19, 2026Updated 2 weeks ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆11Jun 10, 2019Updated 6 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 7 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Feb 27, 2026Updated last week
- ☆11Jun 29, 2021Updated 4 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- new repo☆28May 18, 2021Updated 4 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Apr 19, 2020Updated 5 years ago