A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
☆45Feb 17, 2021Updated 5 years ago
Alternatives and similar repositories for medusa
Users that are interested in medusa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year
- ☆11Sep 16, 2020Updated 5 years ago
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 3 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Mar 10, 2026Updated 2 weeks ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Mar 10, 2026Updated 2 weeks ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆49Jan 14, 2026Updated 2 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Find and visualize rearrangements in DNA sequences☆55Dec 1, 2025Updated 3 months ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 13, 2025Updated 10 months ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated last month
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22May 29, 2018Updated 7 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Jul 7, 2020Updated 5 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Mar 10, 2026Updated 2 weeks ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Mar 10, 2026Updated 2 weeks ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Mar 5, 2026Updated 2 weeks ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 6 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Aug 9, 2012Updated 13 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 2 years ago
- Accurate quality filtering of metagenomic amplicon sequences☆12Aug 26, 2019Updated 6 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- Differential k-mer analysis☆40Jan 29, 2024Updated 2 years ago
- A new algorithm for scaffolding☆10Sep 18, 2018Updated 7 years ago