combogenomics / medusaLinks
A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
☆44Updated 4 years ago
Alternatives and similar repositories for medusa
Users that are interested in medusa are comparing it to the libraries listed below
Sorting:
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- ☆26Updated 5 years ago
- ☆52Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- ☆36Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Recombination-free trees☆58Updated 3 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Toolkit for preparing genomes for submission to NCBI☆30Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- ☆31Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Colinear block visualisation tool☆31Updated last year
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆27Updated last year
- De novo Extraction of Strains from MetAgeNomes☆69Updated 5 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago