EvolBioInf / phylonium
♥ Fast and Accurate Estimation of Evolutionary Distances
☆27Updated 10 months ago
Alternatives and similar repositories for phylonium:
Users that are interested in phylonium are comparing it to the libraries listed below
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 8 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆24Updated 11 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Gene-flank analysis tool☆27Updated 3 months ago
- Genome size estimation from long read overlaps☆50Updated 3 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 weeks ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆56Updated 2 weeks ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Recombination-free trees☆57Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 weeks ago
- Plasmid analysis using rearrangement distances☆33Updated 4 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Colinear block visualisation tool☆30Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆32Updated 3 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Remove human reads from a sequencing run☆38Updated 5 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆37Updated 5 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- Split Kmer Analysis☆62Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆24Updated last week
- PoSeiDon: positive selection detection and recombination analysis pipeline☆37Updated 3 weeks ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago