♥ Fast and Accurate Estimation of Evolutionary Distances
☆29Apr 14, 2025Updated 10 months ago
Alternatives and similar repositories for phylonium
Users that are interested in phylonium are comparing it to the libraries listed below
Sorting:
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 2 weeks ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- ☆14Jan 31, 2020Updated 6 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Apr 19, 2020Updated 5 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 3 weeks ago
- ☆10Jun 9, 2020Updated 5 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆26Jun 20, 2022Updated 3 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Oct 2, 2024Updated last year
- ☆20Nov 30, 2023Updated 2 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 3 months ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- interactive Multi Objective K-mer Analysis☆23Mar 5, 2023Updated 2 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Updated this week
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Apr 20, 2022Updated 3 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆97May 20, 2025Updated 9 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 6 months ago
- A fast multiple sequence alignment program.☆154Feb 11, 2026Updated 2 weeks ago
- ☆27Jun 26, 2025Updated 8 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- CARE: Context-Aware Read Error correction for Illumina reads☆21Nov 1, 2023Updated 2 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Apr 14, 2022Updated 3 years ago
- Find and visualize rearrangements in DNA sequences☆55Dec 1, 2025Updated 3 months ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 5 years ago
- ☆15Aug 22, 2023Updated 2 years ago