EvolBioInf / phyloniumLinks
♥ Fast and Accurate Estimation of Evolutionary Distances
☆29Updated 4 months ago
Alternatives and similar repositories for phylonium
Users that are interested in phylonium are comparing it to the libraries listed below
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Remove human reads from a sequencing run☆40Updated 3 weeks ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Genome size estimation from long read overlaps☆59Updated last week
- ☆31Updated last year
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆15Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- Pan-Genomic Matching Statistics☆53Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Gene-flank analysis tool☆29Updated 8 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Split k-mer analysis – version 2☆88Updated last month
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- ☆44Updated last month
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Recombination-free trees☆59Updated 5 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- Colinear block visualisation tool☆31Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last week