oschwengers / referenceseekerLinks
Rapid determination of appropriate reference genomes.
☆97Updated 10 months ago
Alternatives and similar repositories for referenceseeker
Users that are interested in referenceseeker are comparing it to the libraries listed below
Sorting:
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated last week
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- IS mapping software☆57Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated last month
- Reorients assembled microbial sequences☆130Updated 3 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆76Updated 2 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- Split k-mer analysis – version 2☆101Updated last month
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated last week
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- Precise host read removal☆108Updated 3 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆104Updated 2 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆93Updated 4 months ago
- Prediction of prophages from bacterial genomes☆82Updated 5 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆107Updated last year
- Sorts amplicons from Nanopore sequencing data based on similarity☆40Updated 2 months ago
- ☆84Updated 2 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- SeqSero2☆39Updated 2 months ago
- Recombination-free trees☆62Updated 3 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 2 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago