oschwengers / referenceseekerLinks
Rapid determination of appropriate reference genomes.
☆98Updated 11 months ago
Alternatives and similar repositories for referenceseeker
Users that are interested in referenceseeker are comparing it to the libraries listed below
Sorting:
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated last week
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated 3 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- Precise host read removal☆110Updated 3 months ago
- Reorients assembled microbial sequences☆131Updated 4 months ago
- IS mapping software☆57Updated 4 years ago
- ☆84Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆76Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Split Kmer Analysis☆66Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆93Updated 3 weeks ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 8 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆42Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Microbiome classification pipeline☆65Updated 7 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆83Updated 7 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated 2 months ago
- Split k-mer analysis – version 2☆103Updated last week
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated 2 years ago
- Recombination-free trees☆64Updated 3 months ago
- Predict plasmids from uncorrected long read data☆41Updated last month
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆52Updated last year