Rapid determination of appropriate reference genomes.
☆103Jan 22, 2025Updated last year
Alternatives and similar repositories for referenceseeker
Users that are interested in referenceseeker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆129Oct 22, 2026Updated last week
- A scalable bacterial genome assembly, annotation and analysis pipeline☆80Dec 5, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆692Oct 11, 2026Updated 3 weeks ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Create a tree using Mash distances☆196Oct 24, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies☆10Aug 6, 2024Updated 2 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆158Jul 24, 2026Updated 3 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆103Updated this week
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- a collection of scripts for organising bacterial genomes by species☆79Mar 18, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆209Jun 10, 2026Updated 4 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆182Aug 10, 2026Updated 2 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆66Oct 26, 2026Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆246Oct 8, 2026Updated 3 weeks ago
- BSR-Based Allele Calling Algorithm☆153Oct 8, 2026Updated 3 weeks ago
- An updated pipeline for pangenome investigation☆379Oct 26, 2026Updated last week
- A tool for removing redundant genomes from a set of assemblies☆86Jul 24, 2026Updated 3 months ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆92Oct 3, 2026Updated last month
- A toolbox for pangenome analysis and threshold evaluation.☆103Jul 8, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated 3 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆62Mar 26, 2026Updated 7 months ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 3 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆189Apr 16, 2025Updated last year
- A curated database of completed assemblies with taxonomy IDs☆53Updated this week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆157Dec 31, 2025Updated 10 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆350Jul 24, 2026Updated 3 months ago
- 🔗Genome assembly scaffolder using minimizer graphs☆88Aug 5, 2026Updated 2 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆271Jun 11, 2026Updated 4 months ago
- Sketch-based surveillance platform☆13Updated this week
- geNomad: Identification of mobile genetic elements☆341Oct 14, 2026Updated 2 weeks ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- snipit: summarise snps relative to your reference sequence☆179Jan 13, 2026Updated 9 months ago
- WtP: Phage identification via nextflow and docker or singularity☆108Oct 6, 2026Updated 3 weeks ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 9 months ago