Alternatives and similar repositories for gawn:

Users that are interested in gawn are comparing it to the libraries listed below

• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆54Updated 2 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• rhysf / Synima
  Synteny Imager
  ☆61Updated 7 months ago
• DamienFr / GC_content_in_sliding_window
  Calculate GC% and GC deviation for circular genomes
  ☆17Updated 4 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆87Updated last month
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated 2 weeks ago
• cboursnell / crb-blast
  Conditional Reciprocal Best Blast
  ☆42Updated 8 years ago
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆73Updated 10 months ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆66Updated 7 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• yjx1217 / LRSDAY
  LRSDAY: Long-read Sequencing Data Analysis for Yeasts
  ☆31Updated last year
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆30Updated last week
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 4 months ago
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 2 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆79Updated last year
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆64Updated last month
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 2 months ago
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆25Updated 3 months ago
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆41Updated 2 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆56Updated 2 years ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆38Updated 4 years ago
• johnssproul / RepeatProfiler
  ☆24Updated last month
• daewoooo / SVbyEye
  ☆77Updated last month
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆44Updated 7 months ago
• niccw / repeatcraftp
  meta-pipeline for repetitive element de-fragmentation and annotation
  ☆24Updated 4 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago