NCBI-Hackathons / NovoGraph
NovoGraph: building whole genome graphs from long-read-based de novo assemblies
☆45Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for NovoGraph
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆64Updated this week
- Improved Phased Assembler☆28Updated 2 years ago
- Show pangenome graphs in an easy way☆53Updated 2 years ago
- Structural variant caller☆54Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 years ago
- ☆20Updated this week
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆52Updated last week
- ☆30Updated 2 weeks ago
- Tools for the analysis of structural variation in genomes☆77Updated 7 months ago
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated last month
- WDL workflows for variant calling and assembly using ONT☆28Updated last month
- Dot: An interactive dot plot viewer for comparative genomics☆32Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Find Unique genomic Regions☆29Updated this week
- ☆45Updated 3 years ago
- A list of software for pangenomics☆87Updated last week
- Graph based multi genome aligner☆46Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago