SouthGreenPlatform / culebrONTLinks
A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
☆36Updated 4 months ago
Alternatives and similar repositories for culebrONT
Users that are interested in culebrONT are comparing it to the libraries listed below
Sorting:
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- ☆32Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- ☆27Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Call select base modifications in PacBio HiFi reads☆13Updated 7 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 7 months ago
- ☆64Updated last month
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- Genome-Genome circle synteny☆25Updated last year
- ☆77Updated 5 years ago
- k-mer learning materials☆74Updated 6 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- ☆36Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- SV calling for diploid assemblies☆28Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆46Updated last year