A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
☆14Aug 26, 2024Updated last year
Alternatives and similar repositories for pasty
Users that are interested in pasty are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated last month
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Organism-specific interpretation of AMR genotypes☆15Mar 17, 2026Updated last week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 3 weeks ago
- The MLST pipeline developed by the PathOGiST research group☆36Nov 29, 2023Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆21Apr 20, 2023Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Sep 22, 2022Updated 3 years ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 4 years ago
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- ☆27Aug 2, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Oct 16, 2024Updated last year
- Interpretative standards for AMR genotypes☆29Updated this week
- Docker containers for bioinformatics with a small footprint☆23Mar 19, 2026Updated last week
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 3 weeks ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Intra-species bacterial contamination detection☆25Feb 5, 2026Updated last month
- Recombination-free trees☆63Sep 1, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a comparative genome browser for bacteriophages☆21Jan 17, 2025Updated last year
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- ☆30Mar 20, 2026Updated last week
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Dec 9, 2025Updated 3 months ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 3 months ago
- A curated database of completed assemblies with taxonomy IDs☆51Feb 25, 2026Updated last month
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- ☆36Nov 11, 2022Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Jul 13, 2023Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated 2 weeks ago
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago