A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
☆14Aug 26, 2024Updated last year
Alternatives and similar repositories for pasty
Users that are interested in pasty are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated 3 months ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Mar 25, 2026Updated 2 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Organism-specific interpretation of AMR genotypes☆17Mar 17, 2026Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆95Mar 30, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 15, 2026Updated last week
- The MLST pipeline developed by the PathOGiST research group☆37Nov 29, 2023Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 3 weeks ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆22Apr 20, 2023Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- ☆27Aug 2, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Docker containers for bioinformatics with a small footprint☆23Mar 19, 2026Updated 2 months ago
- Interpretative standards for AMR genotypes☆29May 11, 2026Updated 2 weeks ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 2 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Intra-species bacterial contamination detection☆25Apr 13, 2026Updated last month
- Recombination-free trees☆68Apr 26, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- a comparative genome browser for bacteriophages☆21May 13, 2026Updated last week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Apr 26, 2026Updated last month
- ☆30Updated this week
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆16Apr 22, 2026Updated last month
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13May 5, 2026Updated 3 weeks ago
- A curated database of completed assemblies with taxonomy IDs☆52Updated this week
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- ☆36Nov 11, 2022Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Jul 13, 2023Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆102Jul 8, 2022Updated 3 years ago
- Genome size estimation from long read overlaps☆90May 1, 2026Updated 3 weeks ago