rpetit3 / pasty
A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
☆12Updated 8 months ago
Alternatives and similar repositories for pasty
Users that are interested in pasty are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 11 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆9Updated 3 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Updated 2 years ago
- ☆17Updated this week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated 11 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- Organism-specific interpretation of AMR genotypes☆11Updated last year
- Visualize microbial evolution at the SNP level!☆14Updated 5 months ago
- De novo VIral Genome Annotator☆21Updated 8 months ago
- Surveillance of pathogens using population genomics and sequencing☆23Updated this week
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Targeted Detection and Reconstruction of Plasmids☆20Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆11Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Download assembly files from NCBI☆12Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 5 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated 2 years ago
- Resolving Species Level Classification Using Emu☆12Updated 10 months ago
- cognac: COre GeNe Alignment Concatenation☆9Updated 3 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆10Updated 4 months ago
- ☆11Updated last year