rpetit3 / pasty
A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
☆12Updated 5 months ago
Alternatives and similar repositories for pasty:
Users that are interested in pasty are comparing it to the libraries listed below
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 7 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 10 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆19Updated 7 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆9Updated 3 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 3 years ago
- software to identify primers that can distinguish genomes☆21Updated last week
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last month
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Visualize microbial evolution at the SNP level!☆14Updated 2 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆21Updated 2 years ago
- Generate basic stats for an assembly.☆10Updated last year
- Organism-specific interpretation of AMR genotypes☆10Updated 10 months ago
- Intra-species bacterial contamination detection☆24Updated 2 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Systematic resistome analysis☆10Updated 4 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆11Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆12Updated 4 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- CFSAN Shigella Typing Pipeline☆14Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- Targeted Detection and Reconstruction of Plasmids☆20Updated 8 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated last year
- ☆13Updated 3 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆11Updated 10 months ago