rpetit3 / pastyLinks
A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
☆13Updated last year
Alternatives and similar repositories for pasty
Users that are interested in pasty are comparing it to the libraries listed below
Sorting:
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- ☆11Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Updated 2 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- De novo VIral Genome Annotator☆23Updated last year
- Visualize microbial evolution at the SNP level!☆15Updated 3 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆16Updated last month
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- Neptune: Genomic Signature Discovery☆20Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Updated 2 years ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- Download assembly files from NCBI☆13Updated 2 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆15Updated 2 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Updated 9 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated 2 years ago