bcgsc / arcsLinks
πScaffold genome sequence assemblies using linked or long read sequencing data
β95Updated 11 months ago
Alternatives and similar repositories for arcs
Users that are interested in arcs are comparing it to the libraries listed below
Sorting:
- ONT assembly and Illumina polishing pipelineβ89Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C dataβ187Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphsβ106Updated last month
- Long-read mock community experimentsβ105Updated 4 years ago
- Long read alignerβ115Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigsβ119Updated 3 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA readsβ83Updated 3 years ago
- A fork of exonerate: a generic tool for sequence alignmentβ70Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing dataβ104Updated 4 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.β109Updated 3 years ago
- Assembly statistic visualisationβ90Updated last year
- Research release basecalling models and configurationsβ115Updated 5 months ago
- Python programs for processing GFF3 filesβ101Updated last year
- De novo genome assembly and multisample variant callingβ112Updated 6 years ago
- GenMap - Fast and Exact Computation of Genome Mappabilityβ113Updated last year
- A tool for Racon polishing of miniasm assembliesβ78Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTagβ172Updated 4 years ago
- β117Updated 2 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.β173Updated last year
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.β81Updated 4 years ago
- Analysis components from Oxford Nanopore Researchβ95Updated last year
- β141Updated 5 months ago
- A fast whole-genome aligner based on de Bruijn graphsβ153Updated 3 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatioβ¦β114Updated 4 months ago
- β119Updated last week
- Structural Variant Identification Method using Genome Assembliesβ124Updated 3 years ago
- A list of software for pangenomicsβ134Updated last week
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.β86Updated 11 months ago
- Same species annotation lift over pipeline.β98Updated 2 years ago
- β79Updated 5 years ago