bcgsc / arcsLinks
πScaffold genome sequence assemblies using linked or long read sequencing data
β96Updated 9 months ago
Alternatives and similar repositories for arcs
Users that are interested in arcs are comparing it to the libraries listed below
Sorting:
- SALSA: A tool to scaffold long read assemblies with Hi-C dataβ188Updated last year
- ONT assembly and Illumina polishing pipelineβ89Updated 4 years ago
- Assembly statistic visualisationβ90Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphsβ103Updated 11 months ago
- A tool to identify, orient, trim and rescue full length cDNA readsβ82Updated 3 years ago
- Long read alignerβ115Updated 2 years ago
- Same species annotation lift over pipeline.β98Updated 2 years ago
- β117Updated this week
- Meta-pipeline to identify transposable element insertions using next generation sequencing dataβ104Updated 2 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatioβ¦β112Updated 2 months ago
- Python programs for processing GFF3 filesβ99Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTagβ173Updated 4 years ago
- A tool for Racon polishing of miniasm assembliesβ77Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigsβ118Updated 4 months ago
- Research release basecalling models and configurationsβ115Updated 3 months ago
- Plotting tools for nanopore methylation dataβ93Updated last month
- Chromosome-level scaffolding using multiple referencesβ161Updated 11 months ago
- Analysis components from Oxford Nanopore Researchβ94Updated 11 months ago
- β Long Interval Nucleotide K-mer Scaffolderβ75Updated 4 months ago
- Structural Variant Identification Method using Genome Assembliesβ122Updated 2 years ago
- β116Updated last week
- β78Updated 4 years ago
- Tools for the analysis of structural variation in genomesβ80Updated last year
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodulesβ86Updated 7 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignmentβ88Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensusβ61Updated 6 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple wayβ108Updated 3 weeks ago
- A fast whole-genome aligner based on de Bruijn graphsβ153Updated last month
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genβ¦β145Updated last month
- De novo genome assembly and multisample variant callingβ113Updated 6 years ago