simoncchu / GAPPadder

Related projects: ⓘ

• rikuu / Gap2Seq
  Gap2Seq is a gap filling and insertion genotyping tool.
  ☆18Updated last month
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆27Updated 2 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 4 years ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆14Updated 3 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆59Updated 4 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆28Updated 3 years ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 2 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆49Updated last year
• mbhall88 / pistis
  Quality control plotting for long reads
  ☆10Updated 4 months ago
• thegenemyers / DASCRUBBER
  Alignment-based Scrubbing pipeline
  ☆20Updated 6 months ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆52Updated last year
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated 11 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆45Updated 4 years ago
• bioinfologics / w2rap
  WGS (Wheat) Robust Assembly Pipeline
  ☆22Updated 3 years ago
• KorfLab / CEGMA_v2
  The final version 2 release of our software to detect core genes in eukaryotic genomes
  ☆27Updated 9 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆38Updated 4 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆44Updated 3 years ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆18Updated last week
• lpryszcz / pyScaf
  Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
  ☆24Updated 5 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 4 years ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆20Updated 4 years ago
• mikolmogorov / maf2synteny
  A tool for recovering synteny blocks from multiple alignment
  ☆29Updated 2 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated last month
• maojanlin / biastools
  ☆17Updated 6 months ago
• laurentnoe / yass
  genomic alignment similarity search tool
  ☆19Updated 3 months ago
• at-cg / RAFT
  ☆17Updated 3 weeks ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated 7 months ago
• rvaser / ra
  This repository is deprecated, please use the link to the right.
  ☆23Updated 5 years ago