Alternatives and similar repositories for wengan

Users that are interested in wengan are comparing it to the libraries listed below

• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆122Updated 2 years ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆77Updated 2 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆103Updated 11 months ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 2 years ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆85Updated 9 months ago
• mikolmogorov / Ragout
  Chromosome-level scaffolding using multiple references
  ☆161Updated 11 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 4 years ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆99Updated 6 months ago
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆93Updated last month
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆81Updated 4 years ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆173Updated 4 years ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆95Updated 11 months ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆80Updated last year
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆112Updated 2 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆144Updated last year
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 4 years ago
• phasegenomics / FALCON-Phase
  FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
  ☆74Updated 4 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆103Updated 4 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆102Updated 7 months ago
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆96Updated 9 months ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated last month
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆109Updated last year
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆90Updated last year
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 3 months ago
• AntonBankevich / LJA
  ☆117Updated this week
• paoloshasta / shasta
  De novo assembly from Oxford Nanopore reads.
  ☆83Updated 3 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆139Updated last month
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆104Updated 2 months ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆107Updated 3 months ago