Region Of Interest Classification and Tracking
☆42Oct 14, 2026Updated this week
Alternatives and similar repositories for ROICaT
Users that are interested in ROICaT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simple GUI for automatic and manual alignment across calcium imaging sessions.☆15Jul 2, 2026Updated 3 months ago
- Cell tracking for longitudinal calcium imaging recordings.☆19Dec 11, 2025Updated 10 months ago
- Jax implementation of normcorre☆15Jan 25, 2025Updated last year
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- CNN-ripple is a 1D convolutional neural network (CNN) operating over high-density LFP recordings to detect hippocampal SWR both offline a…☆18Nov 15, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python Neural Analysis Visualization☆20Oct 5, 2026Updated last week
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- Fast, volumetric cell detection. In development.☆26Jul 10, 2026Updated 3 months ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.☆14Feb 7, 2024Updated 2 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Low friction belt treadmill for use in space constrained experimental rigs☆18May 22, 2026Updated 4 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆171Oct 4, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Derotate images acquired via multiphoton calcium imaging☆17Oct 5, 2026Updated last week
- Automated and reproducible analysis of multiphoton imaging datasets☆26Oct 8, 2026Updated last week
- https://nutil.readthedocs.io/en/latest/☆13Jun 15, 2026Updated 4 months ago
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆203Jan 26, 2026Updated 8 months ago
- IBL AI Agent helps you use a coding agent such as OpenAI Codex to analyze International Brain Laboratory (IBL) data.☆53Updated this week
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆14Oct 7, 2024Updated 2 years ago
- ☆36May 19, 2025Updated last year
- BIRDS plug-in on Fiji and attached jar package☆23Oct 7, 2021Updated 5 years ago
- Multi-photon quality control tools☆38Sep 15, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Control and design of two-photon photostimulation experiments☆18Jan 1, 2024Updated 2 years ago
- Jupyter notebook templates for processing and analyzing neuroscience data.☆17Jun 2, 2026Updated 4 months ago
- Pre-processing pipeline for widefield data☆13Dec 11, 2020Updated 5 years ago
- Code for Functional Mixed Models for Fiber Photometry☆19Jul 30, 2025Updated last year
- Registration of cells across sessions.☆81Jul 2, 2026Updated 3 months ago
- Package for removing motion artifacts from two-channel imaging☆11Aug 29, 2023Updated 3 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A gui for browsing joint calcium imaging + behavioral data.☆57Jan 22, 2025Updated last year
- Machine Learning Methods for Neural Data Analysis☆22May 16, 2025Updated last year
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆16Aug 25, 2026Updated last month
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- NIU website on common software problems and their troubleshooting☆10Jul 14, 2026Updated 3 months ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆24Jul 14, 2026Updated 3 months ago