RichieHakim / ROICaTLinks
Region Of Interest Classification and Tracking
☆26Updated last week
Alternatives and similar repositories for ROICaT
Users that are interested in ROICaT are comparing it to the libraries listed below
Sorting:
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Registration of cells across sessions.☆75Updated last year
- NEural MOdelS, a statistical modeling framework for neuroscience.☆107Updated last week
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆152Updated 2 weeks ago
- IBL core shared libraries☆63Updated last week
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Algorithm for automated source extraction from 1P data☆22Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 10 months ago
- Histology processing☆71Updated last month
- Browser-based NWB visualization and DANDI exploration☆60Updated last week
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆103Updated 2 weeks ago
- Web app for viewing results of ephys spike sorting☆27Updated last month
- IaC codebase for the NeuroCAAS Platform☆38Updated last year
- Revealing neural correlates of behavior without behavioral measurements☆15Updated 5 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 9 months ago
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆65Updated last week
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆135Updated 3 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆78Updated 6 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated 11 months ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆41Updated 7 months ago
- a visualization method for neural data☆238Updated 6 months ago
- ☆52Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data☆50Updated last month
- Machine Learning Methods for Neural Data Analysis☆19Updated 5 months ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆33Updated 3 years ago
- "Approaches to Study Neural Circuits" course☆66Updated 10 months ago