RichieHakim / ROICaTLinks
Region Of Interest Classification and Tracking
☆27Updated last week
Alternatives and similar repositories for ROICaT
Users that are interested in ROICaT are comparing it to the libraries listed below
Sorting:
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Registration of cells across sessions.☆75Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 2 months ago
- a visualization method for neural data☆241Updated 9 months ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated last week
- NEural MOdelS, a statistical modeling framework for neuroscience.☆116Updated last week
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆107Updated this week
- Browser-based NWB visualization and DANDI exploration☆62Updated last month
- IBL core shared libraries☆66Updated last week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- ☆52Updated last year
- Histology processing☆72Updated last month
- Web app for viewing results of ephys spike sorting☆27Updated 4 months ago
- Algorithm for automated source extraction from 1P data☆23Updated 2 years ago
- pyqt5 dependent applications for IBL sessions☆32Updated 3 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆139Updated last month
- "Approaches to Study Neural Circuits" course☆65Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 11 months ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆33Updated 3 years ago
- Revealing neural correlates of behavior without behavioral measurements☆16Updated 6 years ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆73Updated this week
- Tools to work with Allen Inst CCF data in matlab☆143Updated 6 months ago
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆74Updated 6 months ago
- Mesoscale activity ephys ingest schema☆11Updated 2 years ago
- pynapple collaborative data analysis (high level python scripts)☆38Updated last month
- IaC codebase for the NeuroCAAS Platform☆39Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago