Alternatives and similar repositories for ROICaT

Users that are interested in ROICaT are comparing it to the libraries listed below

• flatironinstitute / nemos
  NEural MOdelS, a statistical modeling framework for neuroscience.
  ☆104Updated this week
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆63Updated last week
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆151Updated 3 weeks ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆131Updated 2 months ago
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆37Updated last year
• zivlab / island
  Revealing neural correlates of behavior without behavioral measurements
  ☆15Updated 5 years ago
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆103Updated this week
• MouseLand / rastermap
  a visualization method for neural data
  ☆236Updated 5 months ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆63Updated last week
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆76Updated 5 months ago
• inscopix / inscopix-cnmfe
  Algorithm for automated source extraction from 1P data
  ☆21Updated 2 years ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆66Updated 9 months ago
• SpikeInterface / spiketoolkit
  Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.
  ☆50Updated 3 years ago
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆66Updated this week
• petersaj / AP_histology
  Histology processing
  ☆69Updated last week
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆38Updated last year
• mesoscale-activity-map / map-ephys
  Mesoscale activity ephys ingest schema
  ☆11Updated 2 years ago
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆26Updated 2 weeks ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆59Updated last week
• Whitlock-Group / HERBS
  ☆52Updated last year
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆77Updated 9 months ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆47Updated 5 years ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆29Updated 3 weeks ago
• AllenInstitute / openscope_databook
  OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…
  ☆71Updated 2 months ago
• pillowlab / GLMspiketraintutorial_python
  ☆58Updated 3 years ago
• PeyracheLab / miniscoPy
  A package to analyse calcium imaging data recorded with the Miniscope.
  ☆33Updated 3 years ago