RichieHakim / ROICaTLinks
Region Of Interest Classification and Tracking
☆27Updated this week
Alternatives and similar repositories for ROICaT
Users that are interested in ROICaT are comparing it to the libraries listed below
Sorting:
- Registration of cells across sessions.☆75Updated last year
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 11 months ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆105Updated this week
- NEural MOdelS, a statistical modeling framework for neuroscience.☆110Updated last week
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆67Updated this week
- "Approaches to Study Neural Circuits" course☆65Updated 11 months ago
- IBL core shared libraries☆64Updated last week
- Algorithm for automated source extraction from 1P data☆22Updated 2 years ago
- IaC codebase for the NeuroCAAS Platform☆38Updated last year
- Web app for viewing results of ephys spike sorting☆27Updated 2 months ago
- CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.☆12Updated last year
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- ☆52Updated last year
- a visualization method for neural data☆238Updated 7 months ago
- Browser-based NWB visualization and DANDI exploration☆60Updated this week
- Histology processing☆71Updated 2 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆78Updated 7 months ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆33Updated 3 years ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆41Updated 8 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆138Updated 4 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Deconvolution of calcium imaging data☆101Updated 9 months ago
- Mesoscale activity ephys ingest schema☆11Updated 2 years ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆46Updated 6 years ago
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆73Updated 4 months ago
- pyqt5 dependent applications for IBL sessions☆31Updated last month