RichieHakim / ROICaTLinks
Region Of Interest Classification and Tracking
☆19Updated last week
Alternatives and similar repositories for ROICaT
Users that are interested in ROICaT are comparing it to the libraries listed below
Sorting:
- NEural MOdelS, a statistical modeling framework for neuroscience.☆100Updated this week
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆101Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- Registration of cells across sessions.☆75Updated 10 months ago
- Algorithm for automated source extraction from 1P data☆20Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆26Updated 6 years ago
- Browser-based NWB visualization and DANDI exploration☆59Updated 2 weeks ago
- ☆52Updated 10 months ago
- a visualization method for neural data☆229Updated 3 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆75Updated 7 months ago
- IBL core shared libraries☆63Updated 2 weeks ago
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆61Updated this week
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆69Updated this week
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- Revealing neural correlates of behavior without behavioral measurements☆14Updated 5 years ago
- Web app for viewing results of ephys spike sorting☆26Updated 4 months ago
- "Approaches to Study Neural Circuits" course☆65Updated 7 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆169Updated 3 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆52Updated 5 months ago
- Mesoscale activity ephys ingest schema☆11Updated last year
- A package to analyse calcium imaging data recorded with the Miniscope.☆32Updated 3 years ago
- Histology processing☆66Updated last month
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆126Updated 2 weeks ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated 3 months ago
- Deconvolution of calcium imaging data☆96Updated 5 months ago
- Open Neurophysiology Environment☆19Updated 2 weeks ago
- spike extraction from calcium signals (Deneux et al., 2016)☆31Updated 5 years ago