RichieHakim / ROICaT
Region Of Interest Classification and Tracking
☆14Updated this week
Related projects ⓘ
Alternatives and complementary repositories for ROICaT
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆64Updated last week
- NEural MOdelS, a statistical modeling framework for neuroscience.☆82Updated this week
- Browser-based NWB visualization and DANDI exploration☆44Updated this week
- Match suite2p ROIs between imaging sessions☆23Updated 5 years ago
- Algorithm for automated source extraction from 1P data☆19Updated last year
- Web app for viewing results of ephys spike sorting☆25Updated 4 months ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆51Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated 11 months ago
- IBL core shared libraries☆61Updated this week
- miniscope analysis pipeline with interactive visualizations☆91Updated 3 months ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆41Updated this week
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆94Updated this week
- Mesoscale activity ephys ingest schema☆11Updated last year
- IaC codebase for the NeuroCAAS Platform☆34Updated 10 months ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆32Updated 2 years ago
- pyqt5 dependent applications for IBL sessions☆25Updated this week
- ☆51Updated 2 months ago
- Histology processing☆64Updated 7 months ago
- ☆46Updated 2 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆67Updated last month
- A gui for browsing joint calcium imaging + behavioral data.☆50Updated 3 months ago
- Registration of cells across sessions.☆69Updated 2 months ago
- Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.☆12Updated 4 years ago
- WIP: Python port of Kilosort2☆50Updated last year
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆24Updated 4 months ago
- Neuroelectrophysiology object model and data analysis in Python.☆47Updated 2 weeks ago
- Implemenation of Manifold Inference from Neural Dynamics (MIND) from Low & Lewallen et. al, '18☆26Updated 5 years ago
- Deconvolution of calcium imaging data☆84Updated 2 months ago
- Library to perform Slice Tensor Component Analysis (sliceTCA)☆36Updated last month
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year