Control and design of two-photon photostimulation experiments
☆18Jan 1, 2024Updated 2 years ago
Alternatives and similar repositories for Naparm
Users that are interested in Naparm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆13Jan 1, 2024Updated 2 years ago
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 4 years ago
- Generates phase masks for display on an SLM using a weighted GS algorithm☆20Jan 1, 2024Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34May 25, 2026Updated 3 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- Registration of cells across sessions.☆79Aug 20, 2024Updated last year
- https://nutil.readthedocs.io/en/latest/☆13Jun 2, 2026Updated last week
- spike extraction from calcium signals (Deneux et al., 2016)☆36Apr 9, 2020Updated 6 years ago
- Graphical user interface (GUI) in MATLAB for analyzing neural ensembles. It is a flexible tool for analyze the population activity from n…☆11Jul 28, 2020Updated 5 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆195Jan 26, 2026Updated 4 months ago
- 2Photon Imaging and Electrophysiology Analysis code for the Datta Lab @ HMS☆14Feb 3, 2016Updated 10 years ago
- Cell tracking for longitudinal calcium imaging recordings.☆18Dec 11, 2025Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- visual display and analysis python code for retinotopic mapping of rodent visual cortex☆21Aug 30, 2024Updated last year
- cell detection in calcium imaging recordings☆452Updated this week
- motion correction☆17Jan 27, 2023Updated 3 years ago
- Read YAML files into MATLAB as struct☆18Apr 17, 2024Updated 2 years ago
- ☆28Sep 12, 2019Updated 6 years ago
- Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and thet…☆23Jun 20, 2022Updated 3 years ago
- ☆15Oct 13, 2021Updated 4 years ago
- Open Ephys plugins for tracking experiments☆11May 5, 2020Updated 6 years ago
- Coding exercises for Neural Data Science at CSHL in 2019☆31May 9, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools for processing 2P recordings☆133Oct 9, 2023Updated 2 years ago
- Scientific Input-Output; Science-Open☆22May 23, 2020Updated 6 years ago
- A library of fast s-t graph cut algorithms for Python.☆11Feb 9, 2024Updated 2 years ago
- Multi-photon quality control tools☆37Updated this week
- Modified version of QPBO algorithm by Vladimir Kolmogorov for very large graphs.☆11Dec 14, 2018Updated 7 years ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆54Jun 1, 2025Updated last year
- A generalised Gaussian process method for learning vector fields over non-Euclidean domains. Particularly useful for EEG data analysis an…☆25Oct 28, 2024Updated last year
- ☆11Mar 18, 2022Updated 4 years ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆51Jun 2, 2026Updated last week
- ☆46Feb 4, 2019Updated 7 years ago
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆15May 20, 2025Updated last year
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Nov 6, 2025Updated 7 months ago
- Notebooks to accompany sofroniew-vlasov-2015☆10May 18, 2019Updated 7 years ago
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆14Oct 7, 2024Updated last year