Algorithm for automated source extraction from 1P data
☆23Jun 16, 2023Updated 2 years ago
Alternatives and similar repositories for inscopix-cnmfe
Users that are interested in inscopix-cnmfe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆100Nov 14, 2024Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆153Aug 2, 2024Updated last year
- Calcium imaging inter-session alignment☆17May 15, 2026Updated last week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆89Mar 11, 2026Updated 2 months ago
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆15Nov 1, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆161May 8, 2026Updated 2 weeks ago
- ActSort is an active learning accelerated cell sorter tool for calcium imaging.☆26Apr 27, 2026Updated last month
- ☆12Jun 19, 2024Updated last year
- Repository to host materials for the summer workshop on the dynamic brain☆35Sep 2, 2022Updated 3 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Apr 23, 2026Updated last month
- Main repo for the Boss API☆21Nov 21, 2024Updated last year
- Tool to help inspect NWB files for compliance with NWB Best Practices☆22May 19, 2026Updated last week
- BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of …☆13Jun 3, 2025Updated 11 months ago
- Tools to process widefield data☆12Jul 20, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DANDI command line client to facilitate common operations☆27Updated this week
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆721Apr 16, 2026Updated last month
- Python validation, summary, and analysis tools for HED (Hierarchical Event Descriptors).☆18Updated this week
- Pytorch implementation of LocaNMF☆37Feb 17, 2020Updated 6 years ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆28Feb 5, 2026Updated 3 months ago
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- Relational data pipelines for the science lab☆42May 14, 2026Updated last week
- Cell tracking for longitudinal calcium imaging recordings.☆16Dec 11, 2025Updated 5 months ago
- Pipelines and modules for processing optical physiology data☆11Dec 20, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆14Oct 7, 2024Updated last year
- Registration of cells across sessions.☆78Aug 20, 2024Updated last year
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆13Jan 1, 2024Updated 2 years ago
- IaC codebase for the NeuroCAAS Platform☆40Dec 15, 2023Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆98Jul 19, 2024Updated last year
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago
- Source code for https://meta-meta-resources.org☆20Jul 26, 2023Updated 2 years ago
- Widgets for calcium imaging analysis visualization in notebooks☆13Oct 19, 2024Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Deeplabcut network trained to label mice in open field arena with topdown view☆11Feb 21, 2021Updated 5 years ago
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 4 years ago
- Structure Index code repository☆18Jun 13, 2025Updated 11 months ago
- The framework for inferring Langevin dynamics from spike data☆51Mar 23, 2026Updated 2 months ago
- cell detection in calcium imaging recordings☆448May 3, 2026Updated 3 weeks ago
- Repository for mne docker images☆13Apr 2, 2026Updated last month
- In-class notebooks and other useful materials.☆21Apr 14, 2022Updated 4 years ago