Alternatives and similar repositories for inscopix-cnmfe

Users that are interested in inscopix-cnmfe are comparing it to the libraries listed below

• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated this week
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆157Updated 2 weeks ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆96Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆106Updated this week
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆38Updated this week
• MouseLand / rastermap
  a visualization method for neural data
  ☆239Updated 8 months ago
• simonarvin / braincoordinator
  Open-source stereotaxic coordinator
  ☆15Updated 3 years ago
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆27Updated 3 months ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆82Updated 11 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆79Updated 7 months ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated 3 weeks ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆111Updated last month
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆181Updated 4 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• flatironinstitute / nemos
  NEural MOdelS, a statistical modeling framework for neuroscience.
  ☆111Updated this week
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆138Updated 5 months ago
• petersaj / AP_histology
  Histology processing
  ☆71Updated 2 months ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆71Updated this week
• SpikeInterface / probeinterface
  Python package to handle probe layout, geometry and wiring to device.
  ☆75Updated 2 weeks ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated 10 months ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆62Updated 2 weeks ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆65Updated this week
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆143Updated 4 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated 2 years ago
• BarbourLab / lussac
  Package for automatic post-processing and merging of multiple spike-sorting analyses.
  ☆28Updated this week