Algorithm for automated source extraction from 1P data
☆24Jun 16, 2023Updated 3 years ago
Alternatives and similar repositories for inscopix-cnmfe
Users that are interested in inscopix-cnmfe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆63Nov 26, 2023Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆102Nov 14, 2024Updated last year
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆16Aug 25, 2026Updated last week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆91Mar 11, 2026Updated 5 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆169Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Calcium imaging inter-session alignment☆19Aug 13, 2026Updated 3 weeks ago
- ActSort is an active learning accelerated cell sorter tool for calcium imaging.☆27Apr 27, 2026Updated 4 months ago
- A prototype for organizing bibliography notes using Wikidata☆14Nov 8, 2023Updated 2 years ago
- ☆12Jun 19, 2024Updated 2 years ago
- A simple GUI for automatic and manual alignment across calcium imaging sessions.☆15Jul 2, 2026Updated 2 months ago
- Here we provide an ipython notebook to attempt to reproduce the claims made about LIGO data in:☆12Jun 20, 2017Updated 9 years ago
- Repository to host materials for the summer workshop on the dynamic brain☆37Sep 2, 2022Updated 4 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Apr 23, 2026Updated 4 months ago
- Main repo for the Boss API☆21Nov 21, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Online service for finding dendritic spines in microscope slide images☆11Oct 11, 2023Updated 2 years ago
- NDI (Neuroscience Data Interface) is a cross-platform interface standard for reading neuroscience data and storing the results of analyse…☆15Updated this week
- Python validation, summary, and analysis tools for HED (Hierarchical Event Descriptors).☆18Updated this week
- BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of …☆14Jun 3, 2025Updated last year
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆13Jan 1, 2024Updated 2 years ago
- Tools to process widefield data☆12Jul 20, 2021Updated 5 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆734Aug 2, 2026Updated last month
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆28Jul 27, 2026Updated last month
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Relational data pipelines for the science lab☆41May 14, 2026Updated 3 months ago
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆14Oct 7, 2024Updated last year
- Registration of cells across sessions.☆79Jul 2, 2026Updated 2 months ago
- All things Miniscope v4☆156Apr 10, 2026Updated 4 months ago
- Pipelines and modules for processing optical physiology data☆11Dec 20, 2024Updated last year
- IaC codebase for the NeuroCAAS Platform☆40Dec 15, 2023Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆101Aug 25, 2026Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for Functional Mixed Models for Fiber Photometry☆19Jul 30, 2025Updated last year
- Tool to help inspect NWB files for compliance with NWB Best Practices☆24Updated this week
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago
- Source code for https://meta-meta-resources.org☆20Jul 26, 2023Updated 3 years ago
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 4 years ago
- Structure Index code repository☆18Jun 13, 2025Updated last year
- cell detection in calcium imaging recordings☆471Aug 23, 2026Updated 2 weeks ago