Alternatives and similar repositories for inscopix-cnmfe:

Users that are interested in inscopix-cnmfe are comparing it to the libraries listed below

• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 7 months ago
• Whitlock-Group / HERBS
  ☆52Updated 5 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆72Updated 6 months ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆51Updated 3 weeks ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆73Updated 5 months ago
• flatironinstitute / nemos
  NEural MOdelS, a statistical modeling framework for neuroscience.
  ☆89Updated this week
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆114Updated 3 weeks ago
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆37Updated 10 months ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆70Updated 2 months ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆16Updated this week
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆25Updated last week
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆129Updated last week
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆86Updated last week
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆51Updated this week
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆96Updated this week
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆36Updated 4 months ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆52Updated last week
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆25Updated last week
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆62Updated this week
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆51Updated 3 weeks ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆98Updated 2 months ago
• cortex-lab / spikes
  cortex lab code for electrophysiology
  ☆78Updated last year
• SpikeInterface / probeinterface
  Python package to handle probe layout, geometry and wiring to device.
  ☆55Updated 2 weeks ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆24Updated 5 years ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆65Updated 2 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆46Updated last year
• Coen-Lab / chronic-neuropixels
  CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation
  ☆21Updated 3 weeks ago
• djoshea / neuropixel-utils
  Utilities for managing Neuropixel datasets and Kilosort results
  ☆46Updated last year