Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
☆28Dec 21, 2023Updated 2 years ago
Alternatives and similar repositories for PatchWarp
Users that are interested in PatchWarp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Sep 9, 2026Updated last week
- ☆36May 19, 2025Updated last year
- Image processing and tools for widefield imaging☆20Dec 7, 2019Updated 6 years ago
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆16Aug 25, 2026Updated 3 weeks ago
- Flow-Registration toolbox for 2P motion compensation☆27Sep 16, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Calcium imaging inter-session alignment☆19Sep 14, 2026Updated last week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆169Updated this week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 3 years ago
- Fully automated (rodent) limb motion analysis toolbox for behavioral analysis with bodypart coordinate data, building upon markerless pos…☆20Nov 29, 2025Updated 9 months ago
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆111Oct 27, 2023Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆63Nov 26, 2023Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆103Nov 14, 2024Updated last year
- Package for removing motion artifacts from two-channel imaging☆11Aug 29, 2023Updated 3 years ago
- ActSort is an active learning accelerated cell sorter tool for calcium imaging.☆27Apr 27, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MATLAB toolbox for spike-train community detection☆15Feb 12, 2024Updated 2 years ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆16Feb 1, 2023Updated 3 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆91Mar 11, 2026Updated 6 months ago
- Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.☆11Mar 31, 2020Updated 6 years ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆12Mar 3, 2023Updated 3 years ago
- BIRDS plug-in on Fiji and attached jar package☆23Oct 7, 2021Updated 4 years ago
- UCLA Multiphoton Miniature Microscope☆18May 19, 2025Updated last year
- Labeling GUI for multi-camera tracking☆51Sep 25, 2024Updated last year
- ☆21Jul 30, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A simple GUI for automatic and manual alignment across calcium imaging sessions.☆15Jul 2, 2026Updated 2 months ago
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- ☆15Sep 7, 2023Updated 3 years ago
- Python package for streaming video from multiple cameras to disk. Features real-time compression and debayering using FFmpeg.☆51Jan 8, 2026Updated 8 months ago
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆21Updated this week
- ImageJ convenience layer for N5☆21Updated this week
- A collection of useful MATLAB libraries☆16May 31, 2016Updated 10 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Apr 23, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A quickstart guide to tensor decomposition☆74May 10, 2022Updated 4 years ago
- CQL parser for Java☆16Feb 10, 2026Updated 7 months ago
- Dense facial landmarks for thermal imaging☆19Dec 23, 2025Updated 8 months ago
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆75Aug 25, 2026Updated 3 weeks ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆27May 22, 2022Updated 4 years ago
- Histology processing☆80Sep 11, 2026Updated last week
- sync2brain's bossdevice RESEARCH Application Programmable Interface (API) for MATLAB☆14Jul 8, 2026Updated 2 months ago