ryhattori / PatchWarpLinks
Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
☆25Updated last year
Alternatives and similar repositories for PatchWarp
Users that are interested in PatchWarp are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆14Updated 3 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 8 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 11 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆27Updated 3 years ago
- Calcium imaging inter-session alignment☆10Updated last week
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆74Updated 6 months ago
- Histology processing☆66Updated 2 weeks ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆89Updated 7 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- Fiber photometry analysis☆22Updated 2 months ago
- Region Of Interest Classification and Tracking☆19Updated this week
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 5 months ago
- ☆19Updated last year
- ☆52Updated 9 months ago
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- Fiber Photometry Modular Analysis Tool Suite☆40Updated 3 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆24Updated 2 months ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated 2 months ago
- Code for Functional Mixed Models for Fiber Photometry☆11Updated last week
- spike extraction from calcium signals (Deneux et al., 2016)☆30Updated 5 years ago
- ☆34Updated last month
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Brainways☆18Updated last month
- Image processing and tools for widefield imaging☆18Updated 5 years ago
- Registration of cells across sessions.☆75Updated 10 months ago