Match suite2p ROIs between imaging sessions
☆28Apr 12, 2019Updated 7 years ago
Alternatives and similar repositories for ROIMatchPub
Users that are interested in ROIMatchPub are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Registration of cells across sessions.☆79Aug 20, 2024Updated last year
- Control and design of two-photon photostimulation experiments☆18Jan 1, 2024Updated 2 years ago
- cell detection in calcium imaging recordings☆452Updated this week
- Tools for processing 2P recordings☆133Oct 9, 2023Updated 2 years ago
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆163May 29, 2026Updated last week
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆15May 20, 2025Updated last year
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆16Mar 7, 2025Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆195Jan 26, 2026Updated 4 months ago
- https://nutil.readthedocs.io/en/latest/☆13Jun 2, 2026Updated last week
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆13Jan 1, 2024Updated 2 years ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34May 25, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast, volumetric cell detection. In development.☆24May 13, 2026Updated 3 weeks ago
- A Matlab application for electrophysiology data analysis☆22Apr 4, 2025Updated last year
- Python package for analysis of dynamic fluorescence microscopy data☆104Mar 14, 2019Updated 7 years ago
- Notebooks to accompany sofroniew-vlasov-2015☆10May 18, 2019Updated 7 years ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- Machine Learning Methods for Neural Data Analysis☆21May 16, 2025Updated last year
- Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and thet…☆23Jun 20, 2022Updated 3 years ago
- Multi-probe trajectory planning in an intuitive 3D environment☆60Jan 1, 2026Updated 5 months ago
- HDF5 plugin for ImageJ and Fiji.☆12Nov 5, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- NeuraPy is a collection of python modules useful for analyzing data obtained in neurophysiological experiments.☆15Oct 30, 2013Updated 12 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆90Mar 11, 2026Updated 3 months ago
- visual display and analysis python code for retinotopic mapping of rodent visual cortex☆21Aug 30, 2024Updated last year
- Flow-Registration toolbox for 2P motion compensation☆27Sep 16, 2025Updated 8 months ago
- Relational data pipelines for the science lab☆42May 14, 2026Updated 3 weeks ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆28Feb 5, 2026Updated 4 months ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- ☆42Sep 29, 2021Updated 4 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12May 28, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆11Apr 30, 2019Updated 7 years ago
- Mesoscale activity ephys ingest schema☆11Jul 18, 2023Updated 2 years ago
- A simple UI to slice any mesh in any arbitrary direction☆14Aug 18, 2019Updated 6 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆158May 29, 2022Updated 4 years ago
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆45Aug 12, 2024Updated last year
- Markerless pose estimation of user-defined features with deep learning for all animals, including humans☆16Nov 26, 2019Updated 6 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆51Jun 2, 2026Updated last week