Alternatives and similar repositories for ROIMatchPub

Users that are interested in ROIMatchPub are comparing it to the libraries listed below

• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆96Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆32Updated 2 months ago
• petersaj / AP_histology
  Histology processing
  ☆71Updated last week
• Whitlock-Group / HERBS
  ☆52Updated last year
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated 2 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆33Updated 5 years ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆79Updated 8 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆138Updated 2 weeks ago
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆17Updated this week
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆71Updated last week
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆82Updated last year
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated 2 years ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated last week
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆62Updated last month
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆38Updated 3 weeks ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆156Updated last month
• AllenNeuralDynamics / aind-ephys-spikesort-kilosort25-full
  CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
  ☆13Updated last year
• SpikeInterface / probeinterface
  Python package to handle probe layout, geometry and wiring to device.
  ☆76Updated last week
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆15Updated last week
• PridaLab / rippl-AI
  A open toolbox of several machine learning approaches for sharp-wave ripple detection
  ☆32Updated last year
• anoushkajain / UnitRefine
  UnitRefine is a machine-learning toolbox that simplifies spike sorting curation by reducing manual curation.
  ☆64Updated last week
• BarbourLab / lussac
  Package for automatic post-processing and merging of multiple spike-sorting analyses.
  ☆28Updated last week
• JorritMontijn / zetapy
  Python code implementing the ZETA-test
  ☆28Updated 2 months ago
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆40Updated 2 weeks ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆63Updated last year
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆111Updated 2 months ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆66Updated last week