Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).
☆13Sep 17, 2026Updated this week
Alternatives and similar repositories for scanreader
Users that are interested in scanreader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34Aug 31, 2026Updated 2 weeks ago
- Control and design of two-photon photostimulation experiments☆18Jan 1, 2024Updated 2 years ago
- Schemata and libraries for neuroscientific data☆35Sep 17, 2025Updated last year
- visual display and analysis python code for retinotopic mapping of rodent visual cortex☆22Aug 30, 2024Updated 2 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆16Mar 7, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- A companion website for DataJoint☆10Feb 13, 2026Updated 7 months ago
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 6 years ago
- Docker image for MySQL configured to work with DataJoint☆18Sep 3, 2024Updated 2 years ago
- Serial-section automated anatomy extension for ScanImage☆18Sep 7, 2026Updated last week
- A Matlab application for electrophysiology data analysis☆22Apr 4, 2025Updated last year
- Design and documentation for the 2p microscope.☆17Feb 20, 2025Updated last year
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆18Feb 21, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- motion correction☆17Jan 27, 2023Updated 3 years ago
- Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and thet…☆23Jun 20, 2022Updated 4 years ago
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆75Aug 25, 2026Updated 3 weeks ago
- Open Ephys plugins for tracking experiments☆10May 5, 2020Updated 6 years ago
- Pipelines and modules for processing optical physiology data☆11Dec 20, 2024Updated last year
- Sample code for a Zapier engineering blog post☆14Nov 23, 2013Updated 12 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago
- a module for kinematic analysis of deeplabcut outputs☆154Dec 13, 2023Updated 2 years ago
- An application for "evolving" near-optimal offensive play calling strategies.☆11Feb 10, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆16May 6, 2026Updated 4 months ago
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆14Oct 7, 2024Updated last year
- Cookiecutter for snakemake slurm profile☆16Jul 22, 2023Updated 3 years ago
- CEBRA Demo Notebooks. Please see all of them at the URL below:☆16Jun 30, 2025Updated last year
- Micro-Manager Open Source Microscopy Software (http://valelab.ucsf.edu/~MM/MMwiki/). SVN-tracking Git repository☆15Jul 14, 2016Updated 10 years ago
- PyTorch library for breast cancer metastasis detection in whole-slide images of sentinel lymph node tissue from the Camelyon dataset☆15Nov 25, 2019Updated 6 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- ☆14Sep 2, 2020Updated 6 years ago
- Registration of cells across sessions.☆79Jul 2, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analysis of DLC results of different climbing lizard species☆13Mar 14, 2022Updated 4 years ago
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆16May 20, 2025Updated last year
- Main repo for the Boss API☆21Nov 21, 2024Updated last year
- Notebooks to accompany sofroniew-vlasov-2015☆10May 18, 2019Updated 7 years ago
- Database for experimental neuroscience laboratories☆52Updated this week
- Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.☆11Mar 31, 2020Updated 6 years ago
- A simple python script for scraping earnings transcripts from Seeking Alpha☆19Nov 11, 2018Updated 7 years ago