Alternatives and similar repositories for suite3d:

Users that are interested in suite3d are comparing it to the libraries listed below

• brainglobe / bgviewer
  Visualisation and exploration of brain atlases
  ☆9Updated 4 years ago
• neuroinformatics-unit / swc-hpc-pose-estimation
  Pose estimation scripts to be run on the SWC HPC cluster
  ☆12Updated last year
• brainglobe / brainglobe-template-builder
  Build unbiased anatomical templates from individual images
  ☆11Updated this week
• neuroinformatics-unit / course-swc-timeseries-analysis-2023
  ☆10Updated 2 years ago
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 4 years ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated last month
• neuroinformatics-unit / actions
  Re-usable GitHub Action scripts
  ☆10Updated this week
• neuroinformatics-unit / ethology
  Data processing tools for animal behavioural analysis
  ☆16Updated this week
• neuroinformatics-unit / NeuroBlueprint
  Lightweight data specification for systems neuroscience, inspired by BIDS.
  ☆18Updated 3 months ago
• neuroinformatics-unit / fancylog
  Fancier logging with python.
  ☆12Updated last month
• neuroinformatics-unit / HowTo
  NIU website on common software problems and their troubleshooting
  ☆10Updated 3 weeks ago
• neuroinformatics-unit / python-cookiecutter
  Utility to create a basic Python project structure with tests, CI etc.
  ☆28Updated last week
• brainglobe / brainrender_paper
  Code for recreating the figures in the brainrender paper (Claudi et al. 2020)
  ☆12Updated 4 years ago
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆16Updated last year
• neuroinformatics-unit / quarto-presentation-template
  ☆10Updated last year
• brainglobe / napari-brainreg
  Visualise brainreg registration output
  ☆10Updated 3 years ago
• bkntr / brainways
  Brainways
  ☆16Updated 3 weeks ago
• adamshch / SEUDO
  ☆8Updated 3 years ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆21Updated this week
• neuroinformatics-unit / spikewrap
  A package to manage electrophysiology analysis.
  ☆21Updated this week
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆40Updated 2 weeks ago
• brainglobe / imio
  Loading and saving of image data.
  ☆10Updated last year
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆12Updated 2 weeks ago
• neuroinformatics-unit / gsoc
  A repository for our participation in Google Summer of Code
  ☆11Updated this week
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆22Updated last week
• int-brain-lab / ibl-neuropixel
  Collection of tools to handle Neuropixel 1.0 and 2.0 data
  ☆13Updated 3 weeks ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆25Updated 5 years ago
• catalystneuro / roiextractors
  Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…
  ☆13Updated this week
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆30Updated last month
• BelloneLab / lisbet
  LISBET Is a Social BEhavior Transformer (LISBET)
  ☆11Updated last month