Fast, volumetric cell detection. In development.
☆26Jul 10, 2026Updated 3 months ago
Alternatives and similar repositories for suite3d
Users that are interested in suite3d are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- universal mesoscale Imaging Toolbox☆11Updated this week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Jax implementation of normcorre☆15Jan 25, 2025Updated last year
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python Neural Analysis Visualization☆20Oct 5, 2026Updated last week
- NIU website on common software problems and their troubleshooting☆10Jul 14, 2026Updated 2 months ago
- ☆10Mar 15, 2023Updated 3 years ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- Anatomical space conventions made easy.☆12Oct 6, 2026Updated last week
- Build unbiased anatomical templates from individual images☆14Oct 5, 2026Updated last week
- Region Of Interest Classification and Tracking☆42Updated this week
- ☆11Oct 21, 2025Updated 11 months ago
- Multi-photon quality control tools☆38Sep 15, 2026Updated 3 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Fancier logging with python.☆16Updated this week
- Automated and reproducible analysis of multiphoton imaging datasets☆26Oct 5, 2026Updated last week
- Tools for motion correcting, compressing, demixing and visualizing single cell functional imaging data☆20Updated this week
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- A Python package to download neuronal morphologies☆17Oct 5, 2026Updated last week
- analysis tools for large-scale neural recordings☆17Apr 4, 2025Updated last year
- Re-usable GitHub Action scripts☆14Oct 2, 2026Updated last week
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆14Oct 7, 2024Updated 2 years ago
- Derotate images acquired via multiphoton calcium imaging☆17Oct 5, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Read and write files from the BrainGlobe neuroanatomy suite☆15Oct 6, 2026Updated last week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆24Jul 14, 2026Updated 2 months ago
- Utility to create a basic Python project structure with tests, CI etc.☆39Oct 6, 2026Updated last week
- A simple GUI for automatic and manual alignment across calcium imaging sessions.☆15Jul 2, 2026Updated 3 months ago
- Serial-section automated anatomy extension for ScanImage☆19Oct 6, 2026Updated last week
- ActSort is an active learning accelerated cell sorter tool for calcium imaging.☆27Apr 27, 2026Updated 5 months ago
- Standalone cellfinder cell detection algorithm☆19Jan 3, 2024Updated 2 years ago
- Pre-processing pipeline for widefield data☆13Dec 11, 2020Updated 5 years ago
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆111Aug 11, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- motion correction☆17Jan 27, 2023Updated 3 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆91Mar 11, 2026Updated 7 months ago
- A package to manage electrophysiology analysis.☆22Oct 5, 2026Updated last week
- Behavior Classifier Component from the Jax Animal Behavior System☆28Updated this week
- An R toolbox for analysing movement across space and time☆11Oct 6, 2026Updated last week
- Fitting low-rank RNNs to neural trajectories (LINT method).☆20Mar 19, 2025Updated last year