golshanilab / UCLA_2P_MiniscopeLinks
UCLA Multiphoton Miniature Microscope
☆16Updated 7 months ago
Alternatives and similar repositories for UCLA_2P_Miniscope
Users that are interested in UCLA_2P_Miniscope are comparing it to the libraries listed below
Sorting:
- ☆34Updated 7 months ago
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Activity Quantification and Analysis for molecular spatiotemporal signals☆32Updated 2 weeks ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- ☆41Updated 4 years ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- ☆46Updated 5 years ago
- motion correction☆17Updated 2 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆109Updated 4 months ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- ☆52Updated last year
- Calcium imaging inter-session alignment☆15Updated last week
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- QC and cell type assignment for patch-seq transcriptomics data☆24Updated last year
- A GUI and library for doing multi-fiber photometry☆18Updated 8 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Serial-section automated anatomy extension for ScanImage☆17Updated last month
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated 3 weeks ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- ☆20Updated 7 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 9 months ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago