kavli-ntnu / MINI2P_toolboxLinks
The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More details can be found in the original paper "Large-scale two-photon calcium imaging in freely moving mice(2021)".
☆94Updated last year
Alternatives and similar repositories for MINI2P_toolbox
Users that are interested in MINI2P_toolbox are comparing it to the libraries listed below
Sorting:
- Image processing and tools for widefield imaging☆18Updated 5 years ago
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆42Updated 9 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 10 months ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- ☆26Updated last year
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- Multi-probe trajectory planning in an intuitive 3D environment☆54Updated last month
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Main repository for IBL rig code☆22Updated last week
- SpikeGLX recording system GUI [Neuropixels NI]☆90Updated last week
- ☆51Updated 9 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 5 months ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆59Updated this week
- Region Of Interest Classification and Tracking☆19Updated this week
- ☆36Updated 3 years ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆102Updated 5 months ago
- All things Miniscope v4☆139Updated last year
- Utilities for managing Neuropixel datasets and Kilosort results☆46Updated 3 weeks ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆33Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆144Updated this week
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆34Updated 2 months ago
- ☆34Updated 2 weeks ago
- Algorithm for automated source extraction from 1P data☆20Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated last week
- IBL core shared libraries☆63Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated last month
- Database for experimental neuroscience laboratories☆47Updated last week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- A modular package to control stimulation and track behaviour☆44Updated 6 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year