kavli-ntnu / MINI2P_toolboxLinks
The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More details can be found in the original paper "Large-scale two-photon calcium imaging in freely moving mice(2021)".
☆96Updated last year
Alternatives and similar repositories for MINI2P_toolbox
Users that are interested in MINI2P_toolbox are comparing it to the libraries listed below
Sorting:
- All things Miniscope v4☆141Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated last week
- Image processing and tools for widefield imaging☆18Updated 5 years ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆51Updated last year
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆105Updated 8 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆93Updated 9 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆77Updated 8 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 2 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆93Updated last week
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆44Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆258Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Matlab routines for online non-rigid motion correction of calcium imaging data☆152Updated 3 years ago
- Tools to work with Allen Inst CCF data in matlab☆139Updated last month
- a visualization method for neural data☆235Updated 4 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆174Updated 3 weeks ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Histology processing☆69Updated last month
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- A modular package to control stimulation and track behaviour☆46Updated 9 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last week
- Algorithm for automated source extraction from 1P data☆21Updated 2 years ago
- A Python interface to access neuroanatomical atlases☆156Updated this week
- Tools for processing 2P recordings☆127Updated last year
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆32Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆127Updated last month
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 10 months ago
- Registration of cells across sessions.☆75Updated last year