Alternatives and similar repositories for MINI2P_toolbox

Users that are interested in MINI2P_toolbox are comparing it to the libraries listed below

• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆83Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆158Updated 3 weeks ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆98Updated last year
• HarveyLab / mouseVR
  Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks
  ☆43Updated last year
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆111Updated 4 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆57Updated 2 years ago
• Aharoni-Lab / Miniscope-v4
  All things Miniscope v4
  ☆148Updated 2 years ago
• inscopix / inscopix-cnmfe
  Algorithm for automated source extraction from 1P data
  ☆23Updated 2 years ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆101Updated last week
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆49Updated 3 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆145Updated 6 months ago
• cortex-lab / widefield
  Image processing and tools for widefield imaging
  ☆19Updated 6 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• flatironinstitute / CaImAn-MATLAB
  Complete Matlab pipeline for large scale calcium imaging data analysis
  ☆258Updated 2 years ago
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆47Updated last year
• MouseLand / rastermap
  a visualization method for neural data
  ☆241Updated 10 months ago
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆153Updated 3 years ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆185Updated 2 weeks ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated last week
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated last month
• zhoupc / OASIS_matlab
  ☆41Updated 4 years ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆131Updated 2 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆28Updated 6 years ago
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆62Updated 2 years ago
• auto-pi-lot / autopilot
  Distributed behavioral experiments
  ☆95Updated 11 months ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 2 months ago
• nel-lab / FIOLA
  ☆34Updated 8 months ago
• cortex-lab / Rigbox
  A MATLAB toolbox for running behavioral neuroscience experiments and managing data
  ☆32Updated last year
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆152Updated last year