MarioniLab / StabMapLinks
Mosaic single cell data integration using non-overlapping features
☆37Updated 3 years ago
Alternatives and similar repositories for StabMap
Users that are interested in StabMap are comparing it to the libraries listed below
Sorting:
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 7 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆43Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆29Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- ☆61Updated 5 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated this week
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 5 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆51Updated 7 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Single-cell Mutual Information-based Network Engineering Ranger☆22Updated 5 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆44Updated last year
- R package for Bioconductor submission☆38Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 7 months ago
- A record of the analysis pipelines used to create the HTAPP data☆34Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆97Updated 8 months ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆25Updated 6 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20Updated 4 years ago