Mosaic single cell data integration using non-overlapping features
☆38Sep 20, 2022Updated 3 years ago
Alternatives and similar repositories for StabMap
Users that are interested in StabMap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- Invariant Representation learning☆20Jun 26, 2024Updated last year
- scVI extension for unspliced RNA☆15May 18, 2025Updated 10 months ago
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated last month
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 3 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆84Mar 19, 2026Updated 3 weeks ago
- ☆21Jun 17, 2024Updated last year
- scover☆24Nov 3, 2023Updated 2 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 2 years ago
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆12Oct 11, 2021Updated 4 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Dec 11, 2023Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆55Nov 15, 2023Updated 2 years ago
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated last year
- ☆18Oct 22, 2024Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆86Mar 20, 2025Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆424Sep 4, 2025Updated 7 months ago
- A tool for semi-automatic cell type classification☆464Mar 21, 2026Updated 2 weeks ago
- Latent Embedding Multivariate Regression☆101Mar 20, 2026Updated 2 weeks ago
- Normalize CITEseq Data☆70Nov 9, 2025Updated 5 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Apr 4, 2025Updated last year
- ☆11Sep 7, 2023Updated 2 years ago
- Removing empty droplets in multiome datasets☆17Jun 3, 2024Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Fast motif matching in R☆47Jan 24, 2024Updated 2 years ago
- Use hodge decomposition for trajectory analysis☆23Nov 12, 2025Updated 4 months ago
- Multi-resolution Variational Inference☆23Mar 16, 2026Updated 3 weeks ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆18Sep 16, 2021Updated 4 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 3 years ago
- Tools for analyzing Slide-seq data☆32Oct 30, 2023Updated 2 years ago
- ☆27May 22, 2025Updated 10 months ago
- ☆32Updated this week
- QBRC Somatic Mutation Calling Pipeline☆16Feb 8, 2022Updated 4 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Jan 23, 2024Updated 2 years ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 5 months ago