MarioniLab / StabMap
Mosaic single cell data integration using non-overlapping features
☆34Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for StabMap
- ☆39Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆32Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 9 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- ☆27Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 3 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆15Updated last month
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆30Updated 8 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆26Updated 2 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- ☆29Updated last year
- ☆47Updated 3 months ago
- scWGCNA☆55Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆28Updated this week
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆24Updated 5 months ago