MarioniLab / StabMapLinks
Mosaic single cell data integration using non-overlapping features
☆37Updated 2 years ago
Alternatives and similar repositories for StabMap
Users that are interested in StabMap are comparing it to the libraries listed below
Sorting:
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- ☆56Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- Single-cell Case Control Analysis☆52Updated 9 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 months ago
- ☆41Updated 4 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆32Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆29Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆47Updated last year
- ☆58Updated last year
- iterative clustering pipeline of big single cell datasets.☆33Updated this week
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated last week
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆22Updated last month
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago