RausellLab / CelliD
Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
☆93Updated last year
Alternatives and similar repositories for CelliD:
Users that are interested in CelliD are comparing it to the libraries listed below
- ☆59Updated 5 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 6 months ago
- Methods to discover gene programs on single-cell data☆105Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 6 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆78Updated last year
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆96Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆121Updated 8 months ago
- Single Cell Cluster Evaluation☆92Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated last month
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆67Updated 3 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆98Updated last week
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- ☆46Updated 2 years ago
- R package for semi-supervised single-cell data integration☆79Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆81Updated 2 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆62Updated 2 years ago
- ☆60Updated 4 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆66Updated last week
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆99Updated last year
- ☆61Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- scWGCNA☆58Updated 2 years ago
- ☆49Updated 5 months ago