RausellLab / CelliDLinks
Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
☆95Updated 2 years ago
Alternatives and similar repositories for CelliD
Users that are interested in CelliD are comparing it to the libraries listed below
Sorting:
- ☆65Updated 6 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆116Updated 9 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆75Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆66Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Updated 9 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆74Updated 4 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆73Updated 4 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- ☆50Updated 6 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆70Updated last week
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 3 months ago
- simpler single cell RNAseq data clustering☆43Updated 11 months ago
- Create stacked violin plot☆51Updated 3 years ago
- ☆75Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago
- scWGCNA☆61Updated 3 years ago
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago