RausellLab / CelliD
Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
☆93Updated last year
Alternatives and similar repositories for CelliD:
Users that are interested in CelliD are comparing it to the libraries listed below
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆103Updated 2 weeks ago
- ☆59Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 5 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- R package for semi-supervised single-cell data integration☆79Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆119Updated 6 months ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 5 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆94Updated last year
- Methods to discover gene programs on single-cell data☆100Updated 3 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆99Updated 11 months ago
- R package for pathway analysis in scRNA-seq data☆69Updated 6 months ago
- Single Cell Cluster Evaluation☆91Updated 3 years ago
- Mollecular Functional Portraits☆36Updated 10 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆64Updated 3 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆102Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆98Updated this week
- ☆60Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated 3 weeks ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆60Updated 3 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆89Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- ☆46Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆99Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆93Updated 4 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆64Updated 7 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆67Updated 5 years ago
- ☆60Updated last year
- R package for Protein activity analysis of single-cell RNAseq.☆80Updated 2 years ago