Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
☆98Nov 30, 2023Updated 2 years ago
Alternatives and similar repositories for CelliD
Users that are interested in CelliD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- Assessing the purity of single cell population☆152Jun 3, 2022Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- ☆309Nov 10, 2024Updated last year
- AUCell: score single cells with gene regulatory networks☆199Mar 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- ☆12Jun 11, 2023Updated 3 years ago
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆145Mar 13, 2026Updated 4 months ago
- ☆12May 30, 2023Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- A tool for semi-automatic cell type classification☆496May 22, 2026Updated last month
- Metacell - Single-cell mRNA Analysis☆121Updated this week
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆16Feb 26, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆45Mar 30, 2024Updated 2 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆14Jun 10, 2022Updated 4 years ago
- Scissor package☆270May 10, 2024Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆112May 27, 2025Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆301Dec 16, 2025Updated 7 months ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆244Apr 3, 2026Updated 3 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆86Jun 17, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated 2 years ago
- ☆17Jun 17, 2021Updated 5 years ago
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing data☆258Jul 7, 2026Updated 2 weeks ago
- Methods for decontamination of single cell data☆65Feb 16, 2025Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆665Jun 5, 2026Updated last month
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Draw phylogenetic trees of tumor evolution☆86Jul 21, 2023Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆243May 8, 2023Updated 3 years ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆88Mar 19, 2026Updated 4 months ago
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated 3 weeks ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆37Jul 1, 2024Updated 2 years ago