meta-cancer / scPLCView external linksLinks
Codes for the scPLC project
☆74Dec 2, 2022Updated 3 years ago
Alternatives and similar repositories for scPLC
Users that are interested in scPLC are comparing it to the libraries listed below
Sorting:
- ☆57Feb 23, 2024Updated last year
- ☆114Sep 16, 2020Updated 5 years ago
- ☆34Jan 23, 2024Updated 2 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆81Oct 29, 2024Updated last year
- These are scripts for pan-cacner NK cells analyses.☆76Aug 18, 2023Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆61Feb 9, 2026Updated last week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆116Apr 26, 2025Updated 9 months ago
- ☆23Jul 9, 2025Updated 7 months ago
- Spatial Transcriptomic Analysis of OSCC samples☆28Dec 24, 2025Updated last month
- These are scripts for pan-cacner B cells analyses.☆58Jul 22, 2024Updated last year
- Quantifying metabolism activity at the single-cell resolution☆153Jun 27, 2025Updated 7 months ago
- Code used to process the data of the HBCA project☆32Feb 9, 2024Updated 2 years ago
- ☆12Mar 5, 2024Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Apr 22, 2025Updated 9 months ago
- Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal can…☆128May 30, 2025Updated 8 months ago
- ☆11Jul 18, 2025Updated 6 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Oct 7, 2024Updated last year
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆88Oct 9, 2024Updated last year
- ☆49Feb 16, 2022Updated 4 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆132Sep 6, 2024Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Nov 10, 2023Updated 2 years ago
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution☆13Mar 1, 2023Updated 2 years ago
- ☆13Sep 30, 2024Updated last year
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Aug 3, 2024Updated last year
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated last year
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- ☆23Updated this week
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- BANKSY: spatial clustering☆136Oct 15, 2025Updated 4 months ago
- Assessing the purity of single cell population☆141Jun 3, 2022Updated 3 years ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆82Dec 16, 2023Updated 2 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Dec 7, 2022Updated 3 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆230Mar 28, 2024Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated 10 months ago
- ☆16Mar 2, 2023Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- ☆22Mar 6, 2023Updated 2 years ago
- BulkSignalR☆26Jul 24, 2025Updated 6 months ago