arendsee / phylostratrLinks
An R framework for phylostratigraphy
☆32Updated this week
Alternatives and similar repositories for phylostratr
Users that are interested in phylostratr are comparing it to the libraries listed below
Sorting:
- Evolutionary Transcriptomics with R☆45Updated this week
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- ☆35Updated 2 years ago
- Distribution of TEs and their relationship to genes in host genome☆22Updated 2 years ago
- ☆30Updated 2 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last year
- ☆11Updated 3 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities …☆53Updated this week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- ☆28Updated 2 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- Transposable Elements MOvement detection using LOng reads☆22Updated 2 weeks ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆29Updated 9 months ago
- Genome Annotation Without Nightmares☆46Updated 6 months ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆66Updated last year
- DensityMap is perl tool for the visualization of features density along chromosomes☆18Updated 3 years ago
- ☆15Updated 11 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 8 months ago
- Genome wide orthology inference and dNdS estimation☆95Updated last year
- ☆26Updated 5 months ago
- Transposable element polymorphism identification☆33Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated 2 weeks ago
- HyPhy standalone analyses☆46Updated 4 months ago
- Upscaling SV detection to a multi-population level.☆22Updated 2 weeks ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 8 months ago