arendsee / phylostratrLinks
An R framework for phylostratigraphy
☆33Updated 4 months ago
Alternatives and similar repositories for phylostratr
Users that are interested in phylostratr are comparing it to the libraries listed below
Sorting:
- Evolutionary Transcriptomics with R☆49Updated last month
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆28Updated last year
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆30Updated this week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated 3 months ago
- Genome Annotation Without Nightmares☆46Updated 10 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆55Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 8 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- HyPhy standalone analyses☆49Updated 3 months ago
- ☆35Updated 2 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆45Updated last year
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 8 years ago
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 9 months ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- ☆28Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- ☆10Updated 5 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 4 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆53Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year