dekoning-lab / grand-conv
Rapid, interactive, probabilistic analysis of convergent molecular evolution
☆16Updated 7 years ago
Alternatives and similar repositories for grand-conv
Users that are interested in grand-conv are comparing it to the libraries listed below
Sorting:
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- ☆32Updated 4 years ago
- ☆19Updated 2 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 10 months ago
- ☆24Updated 7 years ago
- A box of genomics tools☆21Updated 4 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆18Updated 5 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 2 months ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆20Updated 7 months ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 3 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 7 months ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Software package for estimating fine-scale recombination rate.☆14Updated 3 years ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆17Updated last year
- Domain based annotation of transposable elements☆19Updated this week
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 2 years ago
- Multi-genome synteny block visualization tool☆37Updated 3 months ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago