wurmlab / genomicscourseLinks
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
☆12Updated 8 months ago
Alternatives and similar repositories for genomicscourse
Users that are interested in genomicscourse are comparing it to the libraries listed below
Sorting:
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Master of Pores 2☆23Updated 6 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- A series of scripts to automate sequence workflows☆19Updated last month
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated last month
- Interactive eQTL visualizations☆13Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Updated 7 months ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 9 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆22Updated 3 weeks ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- ☆51Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Teaching modules for Human Genome Variation Lab.☆20Updated 3 weeks ago
- toolkit to process gtf files☆17Updated 3 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last week
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆16Updated 5 years ago
- A pipeline creation tool using Snakemake☆11Updated last week
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago