gengit / PosiGene
☆23Updated 3 years ago
Related projects: ⓘ
- Convergent substitution detection tool based on the PCOC model☆28Updated 2 years ago
- Dinoflagellate Annotation Workflow☆11Updated last year
- Improved Phased Assembler☆27Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 2 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆20Updated 6 months ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- Yet another Hi-C scaffolding tool☆19Updated last year
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- Add multiple thread function for genome comparison☆15Updated 2 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆18Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆23Updated 3 months ago
- use paired-end transcriptome reads to scaffold genomes☆10Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- ☆32Updated 3 years ago
- Genome-Genome circle synteny☆22Updated 9 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 2 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆18Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆21Updated 5 months ago
- Haploidy and Size Completeness Estimation☆13Updated 5 months ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆19Updated last year
- Pangenome analysis of eukaryotes.☆17Updated 3 years ago
- genomic alignment similarity search tool☆19Updated 3 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆16Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆31Updated 11 months ago