Alternatives and similar repositories for dlcpar:

Users that are interested in dlcpar are comparing it to the libraries listed below

• gengit / PosiGene
  ☆26Updated 3 years ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆31Updated 2 years ago
• VIB-PSB / ksrates
  ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…
  ☆17Updated 7 months ago
• xgrau / possvm-orthology
  Possvm: find clusters of orthologs in phylogenies using species overlap & MCL
  ☆12Updated 7 months ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated last year
• arzwa / Whale.jl
  Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
  ☆14Updated 2 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆36Updated 3 months ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆33Updated 6 years ago
• blackrim / phyutility
  ☆21Updated 10 years ago
• balabanmetin / uDance
  ☆43Updated 10 months ago
• fenghen360 / BLAST2OGMSA
  Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
  ☆11Updated 6 years ago
• ballesterus / UPhO
  Scripts for homology and orthology assessment from genomic sequences.
  ☆19Updated 4 years ago
• PlantDr430 / BuscoOrthoPhylo
  Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
  ☆20Updated 5 years ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆47Updated last week
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 4 years ago
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆30Updated 2 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated 2 months ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆35Updated 9 months ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 3 years ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆19Updated 4 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 3 months ago
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆19Updated 4 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆60Updated 4 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated 5 months ago
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated 2 years ago