ohdongha / OrthNetLinks
CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
☆10Updated 3 years ago
Alternatives and similar repositories for OrthNet
Users that are interested in OrthNet are comparing it to the libraries listed below
Sorting:
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 11 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 2 months ago
- ☆31Updated 9 months ago
- ☆21Updated last year
- ☆32Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 3 months ago
- ☆29Updated last week
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- A genome assembly assessment pipeline.☆38Updated 2 years ago
- Multi-genome synteny block visualization tool☆52Updated 2 weeks ago
- Domain based annotation of transposable elements☆21Updated 3 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Modified TIR-Learner for Rice genome☆12Updated 6 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- ☆24Updated 2 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Updated last year
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Updated 5 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated 2 months ago
- ☆44Updated last year