ohdongha / OrthNet
CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
☆9Updated 2 years ago
Alternatives and similar repositories for OrthNet:
Users that are interested in OrthNet are comparing it to the libraries listed below
- Modified TIR-Learner for Rice genome☆12Updated 5 years ago
- ☆29Updated 4 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- ☆28Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆40Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- ☆19Updated 2 years ago
- Domain based annotation of transposable elements☆19Updated last week
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated last year
- ☆27Updated last month
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 4 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 3 weeks ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 3 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Multi-genome synteny block visualization tool☆36Updated 3 months ago
- ☆23Updated last year
- ☆20Updated 9 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆11Updated last year
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 months ago