ohdongha / OrthNet
CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
☆9Updated 2 years ago
Alternatives and similar repositories for OrthNet:
Users that are interested in OrthNet are comparing it to the libraries listed below
- Toolkit for evolutionary analyses of linkage groups☆26Updated 7 months ago
- assembly evaluation tool☆34Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆20Updated 6 months ago
- Centromics: visualing centromeres with multiple omics data☆17Updated last year
- ☆21Updated 11 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 9 months ago
- ☆29Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- ☆38Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆30Updated last week
- Automated pipeline for running CoalHMM☆12Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆38Updated last year
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- Genome Annotation Pipeline☆35Updated 6 months ago
- ☆32Updated 4 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- ☆19Updated 2 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated last month
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year
- ☆25Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 2 months ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago