Evolutionary Transcriptomics with R
☆47May 28, 2026Updated 2 months ago
Alternatives and similar repositories for myTAI
Users that are interested in myTAI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome wide orthology inference and dNdS estimation☆99Jun 30, 2026Updated last month
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆58Jun 17, 2026Updated last month
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 6 years ago
- Seamless Integration of BLAST Sequence Searches in R☆30Sep 10, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for Phylostratigraphy☆13Nov 2, 2022Updated 3 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated 2 months ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Feb 11, 2026Updated 6 months ago
- An R framework for phylostratigraphy☆36Aug 12, 2025Updated last year
- GeneValidator: Identify problems with predicted genes☆49Mar 1, 2024Updated 2 years ago
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated 4 months ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆13Apr 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bio++ Program Suite☆18Jul 10, 2026Updated last month
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- ☆17Jan 6, 2025Updated last year
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- A Mathematica pipeline for genetic analysis in multiparental populations☆13Jan 7, 2025Updated last year
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 3 years ago
- ☆12Dec 22, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆25Apr 21, 2021Updated 5 years ago
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆42Jan 9, 2025Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 6 years ago
- ☆13Jun 3, 2026Updated 2 months ago
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆12May 19, 2019Updated 7 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆60Sep 5, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A probabilistic framework in PyTorch for phylogenetic models☆20Apr 24, 2026Updated 3 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆102Jul 26, 2026Updated 3 weeks ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 3 years ago
- An R package for time course sequencing data analysis☆21May 8, 2023Updated 3 years ago
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆17Jan 26, 2026Updated 6 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆295Oct 4, 2025Updated 10 months ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago