Evolutionary Transcriptomics with R
☆47Feb 6, 2026Updated 2 months ago
Alternatives and similar repositories for myTAI
Users that are interested in myTAI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome wide orthology inference and dNdS estimation☆100Mar 25, 2026Updated 3 weeks ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Nov 29, 2024Updated last year
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- Seamless Integration of BLAST Sequence Searches in R☆30Sep 10, 2023Updated 2 years ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline for Phylostratigraphy☆13Nov 2, 2022Updated 3 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Oct 13, 2025Updated 6 months ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Apr 7, 2026Updated last week
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Feb 11, 2026Updated 2 months ago
- An R framework for phylostratigraphy☆36Aug 12, 2025Updated 8 months ago
- GeneValidator: Identify problems with predicted genes☆49Mar 1, 2024Updated 2 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆13Apr 1, 2024Updated 2 years ago
- ☆16Jan 6, 2025Updated last year
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- Bio++ Program Suite☆18Feb 3, 2026Updated 2 months ago
- ☆11Sep 16, 2021Updated 4 years ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆41Jan 9, 2025Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆25Apr 21, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 3 years ago
- A Mathematica pipeline for genetic analysis in multiparental populations☆13Jan 7, 2025Updated last year
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Sep 5, 2017Updated 8 years ago
- An R package for time course sequencing data analysis☆21May 8, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Transposable Elements Representation Learner (TERL)☆20Jun 2, 2025Updated 10 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆281Oct 4, 2025Updated 6 months ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- ☆11Dec 22, 2025Updated 3 months ago
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆11Oct 20, 2020Updated 5 years ago
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Apr 22, 2021Updated 4 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago