Evolutionary Transcriptomics with R
☆47Feb 6, 2026Updated last month
Alternatives and similar repositories for myTAI
Users that are interested in myTAI are comparing it to the libraries listed below
Sorting:
- Genome wide orthology inference and dNdS estimation☆98Sep 5, 2025Updated 6 months ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 5 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆53Nov 29, 2024Updated last year
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 7 years ago
- Pipeline for Phylostratigraphy☆13Nov 2, 2022Updated 3 years ago
- Seamless Integration of BLAST Sequence Searches in R☆30Sep 10, 2023Updated 2 years ago
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Feb 11, 2026Updated 3 weeks ago
- An R framework for phylostratigraphy☆35Aug 12, 2025Updated 6 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 2 years ago
- GeneValidator: Identify problems with predicted genes☆49Mar 1, 2024Updated 2 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 3 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Oct 13, 2025Updated 4 months ago
- Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement☆10Oct 20, 2020Updated 5 years ago
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Feb 2, 2026Updated last month
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files☆10Dec 26, 2022Updated 3 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 7 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Apr 21, 2021Updated 4 years ago
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆13Apr 1, 2024Updated last year
- ☆15Updated this week
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 5 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Sep 5, 2017Updated 8 years ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Oct 11, 2021Updated 4 years ago
- A Mathematica pipeline for genetic analysis in multiparental populations☆13Jan 7, 2025Updated last year
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆17Jan 26, 2026Updated last month
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 6 years ago
- ☆186May 22, 2025Updated 9 months ago
- Evodictor is a software package for learning patterns and predicting the future of evolution by gain/losses of given traits☆14Sep 27, 2024Updated last year
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16May 27, 2025Updated 9 months ago
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆277Oct 4, 2025Updated 5 months ago
- Galaxy tools and wrappers for sequence analysis☆17Jun 11, 2024Updated last year