drostlab / myTAI
Evolutionary Transcriptomics with R
☆38Updated last month
Related projects: ⓘ
- Transposable element polymorphism identification☆32Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆53Updated last week
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated this week
- Pipeline for Phylostratigraphy☆12Updated last year
- ☆21Updated 3 months ago
- toolkit to process gtf files☆16Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆24Updated last month
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆9Updated 9 months ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆44Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆37Updated 2 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆21Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- ☆12Updated 4 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 4 years ago
- Genomic Association Tester☆28Updated last year
- ☆23Updated 5 years ago
- ☆23Updated 3 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 3 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- Adapters for trimming☆30Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆20Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated last month
- A command line tool to compute mapping statistics from a BAM file☆21Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Integrative analysis of structural variations.☆39Updated 8 months ago
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year