drostlab / myTAILinks
Evolutionary Transcriptomics with R
☆49Updated last week
Alternatives and similar repositories for myTAI
Users that are interested in myTAI are comparing it to the libraries listed below
Sorting:
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- BigWig and BAM utilities☆98Updated last year
- Pipeline for Phylostratigraphy☆13Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- A software for calculating telomere length☆72Updated 7 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 6 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Nanopore data analysis in R☆40Updated 2 years ago
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 4 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- ☆51Updated 6 years ago
- ☆45Updated 8 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- ☆23Updated 11 months ago
- Integrative analysis of structural variations.☆40Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 5 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago