Abdo-Lab / TychusLinks
☆10Updated 7 years ago
Alternatives and similar repositories for Tychus
Users that are interested in Tychus are comparing it to the libraries listed below
Sorting:
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- This pipeline has moved! Please see:☆11Updated 7 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- De novo assembly of nanopore reads using nextflow☆20Updated 5 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 7 years ago
- reference free variant assembly☆34Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆17Updated 6 years ago
- Find Unique genomic Regions☆30Updated last week
- Workflows I find helpful for fungal genome annotation☆21Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 10 months ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Explore and analyze biological sequence data☆17Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- AC-DIAMOND is a DNA-protein alignment tool☆16Updated 2 years ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 6 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago